Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0463 |
Symbol | ydbK |
ID | 5133989 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 518230 |
End bp | 521469 |
Gene Length | 3240 bp |
Protein Length | 1079 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640530786 |
Product | pyruvate-flavoredoxin oxidoreductase |
Protein accession | YP_001215304 |
Protein GI | 147672240 |
COG category | [C] Energy production and conversion |
COG ID | [COG0674] Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit |
TIGRFAM ID | [TIGR02176] pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0388301 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTTGGA TTACTGACGC AAATACGGCC GTTGCCCGCG TTGCTTATCA ACTGAGTGAA GTGCTAGCCG TCTACCCTAT TACACCGAGC ACCAGCATGG CCGAAAGCTG TGAACAATGG GCAAGCCAGC AAAAGAGTAA TCTGCTGGGT GATGTACCCA AACTTGTGGA AATGCAGTCG GAAGCAGGCA GTATTGCGGT TGTTCATGGC GCCGCCATGA GCGGTGCACT TGCCACTACC TTTACCTCAT CGCAAGGTTT ATTGCTCATG ATCCCAAGCT TATACAAGCT TGCTGGTGAA CTGACGCCTT GTGTCATTCA TGTGGCGGCT CGGACTGTCG CTACTCATGC GTTATCCATT TACTGCGATC ATTCGGACGT GATGGCCATC CGCCAAACGG GCGTTGCAAT GCTCTGCGCC AGTAATGCGC AAGAGGCGCA AGATCTGGCC GCCATTGCCA CTTTCAGTGC TTTACAATGC CGCTTACCGT TTGTGCATTT CTTTGATGGA TTCCTCACCT CACACGCCAT TACCCAGATT GAGCCGCTCT CCGAAGAGGC GTTATCTGCA CTGCTACCCA TGCCAGCGTT AGTTGATTTT CGTGCCCGAG CCTTAACGCC CGACCGGCCA ACTCTACGCG GAGCCACTGC CGATCCCGAC AGTTACTTTC AGTGTCGCGA GGCTCAAACA CCATACCATC AAAGTACGCC TGAACAGGTG CAGAACATCA TGAACTGTTT TGAAACACAG ACCGGACGCC GCTACCAGTT GGTCGAGTAT ATCGGTCATC CGCAAGCACA ATCTGTGATT GTCGCAATGG GATCTTCCGT CGACACCATC AAACCAGTCG TCCTTGCTGG CGTTCAACAA GGTGAGCGGA TTGGCGTTAT TCAGATCCGA CTATATCGCC CTTTTCCAAG CCAAGCCTTA CGGGATGCGC TTCCAGCCAC GGTGACTCAT ATCAGCGTAT TGGATCGCAC CAAAGAGCCG GGCAGTCACG GCGAACCGCT TTATCTTGAC GTTTTAAGTG CCTTGTATTC CCAGAGGGCA AACTCGATCC GACTCTCTCG CGGTCGCTAT GGGTTATCAG GAAAAGCGTT TTACCCAGAA GATGTCGAAG CGATTTTCAC CATGATGCAA GCTCCCGAGC AGGAGCAAAT GCACGAGTTT GTGGTGGGTA TTGAAGATGA CGTAAGCCAA CTTACTCTAC CGAAAACGAT TTCAGCGACG AGAGACAAGC CCTATCAAAG TGTTCTGATG TATGGCTATG GCGGCGATGG GAGTGTCAGT GCGGGAAAAA ATCTGATTAA AACCCTAGGC CAAAACTGGC ATGTACAGGG TCAGTTTGAA TACGACTCCA AAAAATCTGC CAATGTCACC ACGACACATA TCCGTTTCAG TCAGCAACCG ATCACTGCTC CCTATCCGGT TCGTCACGCT TGGTTGGTTT CGCTCAGCAA TCTGAAACTT CTCCATGAGC GTGACATTGC CAGCAAGCTG ATCGCCAATG GCTATCTGTT GCTCAACACC GCACTGACGG GGCAAGCACT GTGGGCCGCT TTACCGCCCG CATTGCAAAG TCGCCTTCAG GCTTTATCGG TTCAAGTGTC CACCATCGAT GCCGATGGCT TGATTGAGCG CCATCAACTC GGCAATAAAA CCAGTATTGT GATGCAAGCC GCGGCGGCTC GATTATTAAG CCAGCATACC GAACAGGCGT TATTGACCTC ACTGGAAGCG AGTCTAACCG AACAGCTCAA ACACCGTTCA GACCAGCAAC TGACACAAAG CCTGCAATGC CTGAACCAAG CGTACCAGTC GGTGTGTGAG ATGCCTTTTG CGATCCCAAG TGAAACAACG ATGGCCATCC AGAGCCAGCC GAAGATTTGG GGCGCGAGCT TGGTTGAACA ACTGCTGGCG GGGAAAGGCG ATGCGCTACC TGTCTCGGCT TATCCGGCCG ATGGAGTATG GCCTACCAAT ACTTCGCAGT TAGAAAAGCG CAATCTTGCT GAACAGCTGC CGGTTTGGGA AACCGATCTT TGCACTCAAT GCGGTTACTG CGTCGCGATT TGCCCGCATT CGGCGATTCG TGCCCGCATT GTGAGCGAAA CCCATCCCAC CTTGAGTGAG TTAAAAAGCC TGCCTTATCG CTCAAGACAG CAACCCGATG CGCATTATGT ACTGCAAGTG TCGCCGGATG ACTGTACTGG CTGCCAGTTA TGCACTCAGG TTTGCCCAGC AAAAGATCGA CAAGAGCCAG AGCGTAAGGC ATTGAATATG TTTGAGAAGA ACCTCAGTTA TCAGTCAGAG CAACAAAGAT TCACTCATTT CCAAGCCTTG CCGAAGCAGT CGGCCTATCA GCAGCAGCGA ATTGATGTCA AAACATTGCA GCACGTTGAG CCCTATTTTG AATACCCGAA TGCCTGTGCA GGATGCGGAG AAACGCCTTA TATCCGTATT TTGACTCAGT TATTCGGCGA TCGATTGATG ATTGCGAACG CGACAGGCTG CTCCTCAATT TTTGGCGGCA ATCTACCCAC GACGCCTTAC AGTCAGGATA GTGATGGACG AGGCCCTGCT TGGGCCAACA GCCTATTTGA GGATAATGCC GAATTTGGCT TGGGCATGAA TATGGCACTG GAAGCCTTAC AATCGCGTGC GCAGCGTTTG CTAGGCGGAT ATACCCCGCA ATCTCCGCTT CCCGATCTAA GATCGCAGAT TGCTGAGCTG AAGCAGCGAC TTCCTGCTCA CTCGGAAGAG CAACTGCTGG CCGATTATTT AAGCGAAAAA ATGGTGTGGA TGATAGGAGG TGACGGCTGG GCTTATGACA TCGGCTTTGG CGGACTCGAT CATGTGATGC GCAGCGGACG TAACATCAAT ATTCTGGTTC TGGATACGCA GTGTTACTCC AATACTGGTG GACAAAAATC CAAGTCCACT CCGCAAGGAC AAACCGCGAA ATTGTGCAGT TTACCCAATC CAAGTCCAGC CAAAGATCTG GTTAAACTTT ACCAAGATCT GCCCGGTGCG TTTGTAGCGA GAATAGCCTT GGGTGCCAAC ATCAATCAGA CCATTAAAGC GCTGCAAGCT GCAGGTGAAC ATTCTGGTCC GTCATTGGTT GTCGCCTATT CGCCCTGCAT CGAGCACCAT TACGATTTGG CACACAGTGC GCAAGTTACA AAAGAGGTGG TGAAATCTGG CGCATGGCCG CTGTATGCGG GCGTCGCGCA ACAAGATTAG
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Protein sequence | MTWITDANTA VARVAYQLSE VLAVYPITPS TSMAESCEQW ASQQKSNLLG DVPKLVEMQS EAGSIAVVHG AAMSGALATT FTSSQGLLLM IPSLYKLAGE LTPCVIHVAA RTVATHALSI YCDHSDVMAI RQTGVAMLCA SNAQEAQDLA AIATFSALQC RLPFVHFFDG FLTSHAITQI EPLSEEALSA LLPMPALVDF RARALTPDRP TLRGATADPD SYFQCREAQT PYHQSTPEQV QNIMNCFETQ TGRRYQLVEY IGHPQAQSVI VAMGSSVDTI KPVVLAGVQQ GERIGVIQIR LYRPFPSQAL RDALPATVTH ISVLDRTKEP GSHGEPLYLD VLSALYSQRA NSIRLSRGRY GLSGKAFYPE DVEAIFTMMQ APEQEQMHEF VVGIEDDVSQ LTLPKTISAT RDKPYQSVLM YGYGGDGSVS AGKNLIKTLG QNWHVQGQFE YDSKKSANVT TTHIRFSQQP ITAPYPVRHA WLVSLSNLKL LHERDIASKL IANGYLLLNT ALTGQALWAA LPPALQSRLQ ALSVQVSTID ADGLIERHQL GNKTSIVMQA AAARLLSQHT EQALLTSLEA SLTEQLKHRS DQQLTQSLQC LNQAYQSVCE MPFAIPSETT MAIQSQPKIW GASLVEQLLA GKGDALPVSA YPADGVWPTN TSQLEKRNLA EQLPVWETDL CTQCGYCVAI CPHSAIRARI VSETHPTLSE LKSLPYRSRQ QPDAHYVLQV SPDDCTGCQL CTQVCPAKDR QEPERKALNM FEKNLSYQSE QQRFTHFQAL PKQSAYQQQR IDVKTLQHVE PYFEYPNACA GCGETPYIRI LTQLFGDRLM IANATGCSSI FGGNLPTTPY SQDSDGRGPA WANSLFEDNA EFGLGMNMAL EALQSRAQRL LGGYTPQSPL PDLRSQIAEL KQRLPAHSEE QLLADYLSEK MVWMIGGDGW AYDIGFGGLD HVMRSGRNIN ILVLDTQCYS NTGGQKSKST PQGQTAKLCS LPNPSPAKDL VKLYQDLPGA FVARIALGAN INQTIKALQA AGEHSGPSLV VAYSPCIEHH YDLAHSAQVT KEVVKSGAWP LYAGVAQQD
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