Gene VC0395_0459 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0459 
Symbol 
ID5134288 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp512052 
End bp513458 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content49% 
IMG OID640530782 
Productchloride channel protein 
Protein accessionYP_001215300 
Protein GI147672132 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0038] Chloride channel protein EriC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.511438 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAACAA GAGAGACGTT TAAGATCAGT TTGCTGGCCA AAATGCCTAA AGATGTGATT 
AACCAATTTC TCTCAAAAGA TAAGACGCCT TTCTCAGTTT TGTTTTTATC ATTGCTGGTT
GGTATTTTGG CTGGCTTGGT CGGCACCTAT TTTGAACAGG CGGTACATCT AGTCTCAGAA
ACTCGTACCG ATTGGCTAAA AAGTGAAATT GGCAGCTTTT TACCACTCTG GTTGGCTGCG
TTTCTGATCA GCGCATTTCT CGCTTTCATC GGCTATTTTC TTGTCCACCG CTTTGCTCCT
GAAGCTGCGG GATCTGGTAT TCCAGAAATT GAAGGCGCGA TGGATGGCAT GCGCCCCGTG
CGTTGGTGGC GAGTATTGCC CGTGAAATTT TTTGGCGGCA TGGGCGCGTT GGGCTCAGGT
ATGGTGCTCG GCCGCGAAGG TCCTACAGTA CAAATGGGCG GCGCCGTTGG GCGGATGATC
TCCGATATTT TCCGTGTCAA AAATGAAGAT ACGCGCCACT CATTGCTGGC TGCGGGTGCG
GCAGGAGGTC TTGCTGCCGC ATTTAACGCG CCTCTTGCTG GCATTATGTT TGTGATCGAA
GAGATGCGAC CGCAATTTCG CTATACCCTG ATCTCGGTAC GTGCGGTGAT CATCTCTGCA
GTAGCGGCCA ACATTGTGTT TCGCGTGATC AACGGACAAG ATGCGGTGAT CACGATGCCA
CAATACGATG CGCCGGAATT GTCGACGCTA GGGTTATTCT TACTTCTTGG TGCCCTATTT
GGCGTATTTG GCGTGCTGTT TAACTATTTA ATTACCCTTG CCCAAGATCT GTTCGTTAAA
TTTCATCGCA ATGACCGTAA ACGCTATCTA TTAACGGGTT CAATGATCGG TGGCTGTTTC
GGGTTATTGC TGCTCTATGT GCCTGAGTTA ACGGGTGGCG GTATCAGCTT AATTCCCACT
ATCACGAATG GCGGCTACGG AGCGGGTATT TTATTGCTGC TGTTTGTTGG CCGAATTTTT
ACCACTTTAC TTTGCTTTGG CTCAGGTGCG CCCGGGGGGA TTTTTGCTCC TATGCTCGCA
CTAGGTACCC TGTTTGGTTA TGCCTTCGGC TTGATCGCTA AAGTGTGGTT CCCAGAACTG
AATATTGAAC CTGGGATGTT TGCGATTGCT GGTATGGGTG CGTTATTCGC CGCAACCGTG
CGGGCACCTA TCACGGGTAT TTTATTGGTG ATCGAAATGA CCAATAACTA TCACCTGATC
CTGCCACTGA TTATTACCAG CTTAGGCGCG GTGATTTTTG CCCAGTTACT GGGTGGCCAA
CCCATCTATA GCCAGCTATT ACATCGCACT CTGAAAAACC AAAAATTACA GCAACAAGAT
TTACCACCGC AGAGCCCCAA CTCATAA
 
Protein sequence
MSTRETFKIS LLAKMPKDVI NQFLSKDKTP FSVLFLSLLV GILAGLVGTY FEQAVHLVSE 
TRTDWLKSEI GSFLPLWLAA FLISAFLAFI GYFLVHRFAP EAAGSGIPEI EGAMDGMRPV
RWWRVLPVKF FGGMGALGSG MVLGREGPTV QMGGAVGRMI SDIFRVKNED TRHSLLAAGA
AGGLAAAFNA PLAGIMFVIE EMRPQFRYTL ISVRAVIISA VAANIVFRVI NGQDAVITMP
QYDAPELSTL GLFLLLGALF GVFGVLFNYL ITLAQDLFVK FHRNDRKRYL LTGSMIGGCF
GLLLLYVPEL TGGGISLIPT ITNGGYGAGI LLLLFVGRIF TTLLCFGSGA PGGIFAPMLA
LGTLFGYAFG LIAKVWFPEL NIEPGMFAIA GMGALFAATV RAPITGILLV IEMTNNYHLI
LPLIITSLGA VIFAQLLGGQ PIYSQLLHRT LKNQKLQQQD LPPQSPNS