Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0442 |
Symbol | orfB |
ID | 5134104 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | + |
Start bp | 488478 |
End bp | 489350 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640530765 |
Product | transposase OrfAB, subunit B |
Protein accession | YP_001215283 |
Protein GI | 147672044 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 49 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGATAATCA AGAAACTCAA GCAGAGCCAC AGCGTAAAAA TATTATGCGA AGTCTTCAAT GTTCATCGAA GTAGTTATCA CTATTGGCTT AAACGCCCAG CGTTAATTAA TGCGGAAACA ATAAAACTGC GCAGCTTGAT TAGCGAGGCT CACGCCGCAA GCAATGGCTC TGCGGGAGCG AGAACCATTG CAGATATAGT CACAAATCAG GGTGTAAAGC TGAGCCGATA CCGAGCAACA AAGCTAATGA GAACTCTTGG TTTAGTAAGC TGCCAAGAAC CAAAGCATCG TTACAGAAAG GCTTCACAAG AACATATTGA CGTTCCAAAT CACTTAAGTC GTCAATTTGC TGTTACGGCT CCAAATGAAG TCTGGGCTGG CGATGTTACG TATATTTGGA CTGGTAATCG GTGGATGTAT TTAGCGGTCG TTATCGATCT TTTTGCCCGC AAAGTGATCG GTTGGTCAAT GTCTTTGTCG CCTGATAGTC GGTTGACAGG TAAAGCGCTG TCTATGGCCT ATGAATCTCG CGGAAAGCCA AAAGGTGTCA TGTTCCATAG CGATCAAGGC AGTCATTATA CTAGCCGTAA ATACCGTCAA TTACTGTGGC GCTTTCAAAT AAAACAGAGT TTATCTCGCC GAGGAAACTG TTGGGATAAT GCGCCGATAG AGCGCTTCTT TAGAAGTCTG AAGACGGAAT GGGTGCCAAC TGTGGGTTAT CGTAGCTTCG CTGAGGCTCA ACAAGAGATC ACCCGCTACA TTATCGGATA TTACTGCCAA CTCAGGCCAC ATCAGTATAA CGGTGGTCTA ACTCCCAATG AATCAGAACG ATTATATTGG GAAAACTCTA AAACCGTGGC CAATTTTAGT TGA
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Protein sequence | MIIKKLKQSH SVKILCEVFN VHRSSYHYWL KRPALINAET IKLRSLISEA HAASNGSAGA RTIADIVTNQ GVKLSRYRAT KLMRTLGLVS CQEPKHRYRK ASQEHIDVPN HLSRQFAVTA PNEVWAGDVT YIWTGNRWMY LAVVIDLFAR KVIGWSMSLS PDSRLTGKAL SMAYESRGKP KGVMFHSDQG SHYTSRKYRQ LLWRFQIKQS LSRRGNCWDN APIERFFRSL KTEWVPTVGY RSFAEAQQEI TRYIIGYYCQ LRPHQYNGGL TPNESERLYW ENSKTVANFS
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