Gene VC0395_0442 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0442 
SymbolorfB 
ID5134104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp488478 
End bp489350 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content44% 
IMG OID640530765 
Producttransposase OrfAB, subunit B 
Protein accessionYP_001215283 
Protein GI147672044 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones49 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATAATCA AGAAACTCAA GCAGAGCCAC AGCGTAAAAA TATTATGCGA AGTCTTCAAT 
GTTCATCGAA GTAGTTATCA CTATTGGCTT AAACGCCCAG CGTTAATTAA TGCGGAAACA
ATAAAACTGC GCAGCTTGAT TAGCGAGGCT CACGCCGCAA GCAATGGCTC TGCGGGAGCG
AGAACCATTG CAGATATAGT CACAAATCAG GGTGTAAAGC TGAGCCGATA CCGAGCAACA
AAGCTAATGA GAACTCTTGG TTTAGTAAGC TGCCAAGAAC CAAAGCATCG TTACAGAAAG
GCTTCACAAG AACATATTGA CGTTCCAAAT CACTTAAGTC GTCAATTTGC TGTTACGGCT
CCAAATGAAG TCTGGGCTGG CGATGTTACG TATATTTGGA CTGGTAATCG GTGGATGTAT
TTAGCGGTCG TTATCGATCT TTTTGCCCGC AAAGTGATCG GTTGGTCAAT GTCTTTGTCG
CCTGATAGTC GGTTGACAGG TAAAGCGCTG TCTATGGCCT ATGAATCTCG CGGAAAGCCA
AAAGGTGTCA TGTTCCATAG CGATCAAGGC AGTCATTATA CTAGCCGTAA ATACCGTCAA
TTACTGTGGC GCTTTCAAAT AAAACAGAGT TTATCTCGCC GAGGAAACTG TTGGGATAAT
GCGCCGATAG AGCGCTTCTT TAGAAGTCTG AAGACGGAAT GGGTGCCAAC TGTGGGTTAT
CGTAGCTTCG CTGAGGCTCA ACAAGAGATC ACCCGCTACA TTATCGGATA TTACTGCCAA
CTCAGGCCAC ATCAGTATAA CGGTGGTCTA ACTCCCAATG AATCAGAACG ATTATATTGG
GAAAACTCTA AAACCGTGGC CAATTTTAGT TGA
 
Protein sequence
MIIKKLKQSH SVKILCEVFN VHRSSYHYWL KRPALINAET IKLRSLISEA HAASNGSAGA 
RTIADIVTNQ GVKLSRYRAT KLMRTLGLVS CQEPKHRYRK ASQEHIDVPN HLSRQFAVTA
PNEVWAGDVT YIWTGNRWMY LAVVIDLFAR KVIGWSMSLS PDSRLTGKAL SMAYESRGKP
KGVMFHSDQG SHYTSRKYRQ LLWRFQIKQS LSRRGNCWDN APIERFFRSL KTEWVPTVGY
RSFAEAQQEI TRYIIGYYCQ LRPHQYNGGL TPNESERLYW ENSKTVANFS