| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0332 |
|---|
| Symbol | |
|---|
| ID | 5135026 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 364306 |
|---|
| End bp | 365445 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640530655 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001215173 |
|---|
| Protein GI | 147671763 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3835] Sugar diacid utilization regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATACTGG ACAGTCAATT AGCGCAACAA ATTGTCGATC GCACCATGGC GATCATCGGC
TACAACATCA ATGTGATGAA TCAAGCTGGA GTGATCATTG GCAGTGGCGA GAAAAATCGG
ATTGGCCAAG TGCATGATGG TGCAATTTTG GCACTCAAAC ATGGCGATTC GGTAGAGCTA
ACGGCAGAAA GCTGCGTGGC ACTGAAAGGT GTAAAACCAG GCATCAACAT GGTGTTGAGA
AATCAGCAGC AAGTGGTCGG GATTGTGGGG ATTACCGGAG AGCCGAAAGA TATTCGTGAT
TTTGCCAATC TGGTCAAAAT GAGTGCCGAA ATGATCATTG AGCAAGCAGC TTTGGTCGAA
CAACTACAAT GGGATCGGCG GCATCGTGAA GAGTTCATTT CCGCTTGGAT ACACAATACC
TTATCGGCCG CCGAACTTGA TGCATGGGCG GCGAGACTTT CCATTGACCT CTCTAAGCCT
CGCGTGGCAG TGGTCATCGC CTTTCGTCAA CCGAAAAGTG GACAAAGCTT GGATCAGATC
CGTCAAGTGG TTGAGCTTTT GGAGCACCCT GAACGGGACA ATCTGGTCGC TGTGGTTTCT
ATGCAAGAGA TAGTCGTGCT CAAACCTTGT CGAACACCAG AGCATTGGAC CAGCGAATAC
GAAAGTTTGC GGATTGATAA GTTGATGGCG AGGCTCAAAG CCTATGACAT CACAGGATAT
GACATTGCTT TAGGCCAGCT TTTTATCAAC CCAAACGCGA TCCATCTCTC TTACCAAAGT
GCCAAGCAGG TACTGAGGAT TGGCCAAGTA CGCCAGCCAG AAAAACAGAA ACATCTCTAC
GAGGAACTGC GTTTGCCGGT ATTGCTTTTG CCATTGAATG AAGGATGGCA AGGTGAACAG
TGGCGACGAG TCATGCAGGA GTTGCAGACA CAGGATAAGT CAGGGCAACT CGTGAAAACG
TTAAAGGGAC TATTTGCGGC AAATGGCAAC TTGAATCTTT GCGCCCAACA ACTGTTTATC
CACCGAAATA CGCTGCGCTA TCGTTTAGAA AAAATCACCG AAATTACAGG GATTGAGACT
AACTCCTTAC TTGGTTTGGC GGAATTGTAT ATTGCGTATC AGCTCACAAG TTATGATTAA
|
|---|
| Protein sequence | MILDSQLAQQ IVDRTMAIIG YNINVMNQAG VIIGSGEKNR IGQVHDGAIL ALKHGDSVEL
TAESCVALKG VKPGINMVLR NQQQVVGIVG ITGEPKDIRD FANLVKMSAE MIIEQAALVE
QLQWDRRHRE EFISAWIHNT LSAAELDAWA ARLSIDLSKP RVAVVIAFRQ PKSGQSLDQI
RQVVELLEHP ERDNLVAVVS MQEIVVLKPC RTPEHWTSEY ESLRIDKLMA RLKAYDITGY
DIALGQLFIN PNAIHLSYQS AKQVLRIGQV RQPEKQKHLY EELRLPVLLL PLNEGWQGEQ
WRRVMQELQT QDKSGQLVKT LKGLFAANGN LNLCAQQLFI HRNTLRYRLE KITEITGIET
NSLLGLAELY IAYQLTSYD
|
|---|
| |