Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0327 |
Symbol | tonB1 |
ID | 5134173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 358668 |
End bp | 359417 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640530650 |
Product | tonB1 protein |
Protein accession | YP_001215168 |
Protein GI | 147671825 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.000000128507 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGGGAGA AGGACGTGAA TCTGAACAGA TATGTCATTG CGGGAGGGCT TTCCCTAGCT TTTCACGCGC TATTGCTTAT CACGACAGAT GAAGCACAGG TGTTTGCCAT GCCTGCTGGA AACCCAACTC AATCGGTTTC GATCAATATG GTTTCGATGC CTAAAGTCGC ACCCGCTCAA CCAGAGCAAA CCCAAACAGA ACAATCAAAA CTGGAATCGG TCAAGCCGAC ACCAGTACAA GAAGTCGTAA AAACTCCGCC TGCTAAGCCG AAGGTGGAGC CGCACAAACC TAAACCTCAA ACCGTGAAAA AACCCGTACC GGCTGAGCAA GTCCCATCCA AATCGGTAGC GAAGCCGCAA CCGGAGAAGG TAGAGCGTAC CGCTGAAATG GCACAAAAGC CTGCGCCAAC GCCTAACCAG CAACCGAGCC AGCCCACGGC GGCTAGCCAA GGCATCACAA GTCAACCTAT TTTGGTGGAT AAGCCCGCTT TAGTGAGCGC ACAAGTTCAA CCACGTTATC CACGTATTGC TCGTAAGCGC GGGATCGAAG GCACTGTGAT GTATGAAATT TGGTTGGATG CGCAAGGTAA TCAAATCAAG CAGCAATTGC TCTCTTCATC CGGCACAGAA GCCCTAGATC AATCGGCGCT CGAAGCCATT AAACAGTGGA AATTTTCTCC ACATATTCTT GACGGTGTGC CCGTAGCTCA CCGAATTCAT ATCCCTATTC GTTTTAAATT GGAAGGCTAA
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Protein sequence | MREKDVNLNR YVIAGGLSLA FHALLLITTD EAQVFAMPAG NPTQSVSINM VSMPKVAPAQ PEQTQTEQSK LESVKPTPVQ EVVKTPPAKP KVEPHKPKPQ TVKKPVPAEQ VPSKSVAKPQ PEKVERTAEM AQKPAPTPNQ QPSQPTAASQ GITSQPILVD KPALVSAQVQ PRYPRIARKR GIEGTVMYEI WLDAQGNQIK QQLLSSSGTE ALDQSALEAI KQWKFSPHIL DGVPVAHRIH IPIRFKLEG
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