| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0279 |
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| Symbol | |
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| ID | 5134014 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 315177 |
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| End bp | 316550 |
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| Gene Length | 1374 bp |
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| Protein Length | 457 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640530602 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001215120 |
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| Protein GI | 147671617 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3452] Predicted periplasmic ligand-binding sensor domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGTTAA CCTCGCACAA ATATAAGTAT GTCTCAATTT ATTTTCTCGC CTTACTCTTT
TTGGGCATTG CGGTTATTGA ATCCCTTCAT ATTAGCCATA CACGTGATCT ACAAGAGGGT
TTACGTCAAC AAGCTAAAGA AGATCTTTCC ATCGTACGTT TTCAATTAGA AGCTGAGATT
TTGGGTGATA TCTATACCGT AAAAGGTTTA ACAACCCTGT TAACCCTAGA TCCCGACCTC
AATATCTATC AATGGGAGCC GCTTTCAGCG GCGGTGATCA GGAATAGCGA TCACTTACGC
TCATTAGGTA TCGCCCCTAA TGATGTGGTC GCTTTCAGCT ATCCGCTTCC TCAAACCAAT
GCACTACTCG GTTTGGATTA CCGCACCGTT CCTCAGCAGT GGCAGTCAAT AAAAAAAGCA
CGTGAAATCA AACAGACGTT CGTCTCTGGA CCTGTCGATC TCGTTCAAGG TGGGCGCGCG
CTGGTGATTC GAGAACCGAT ATTCTACGAC CCACCGAAGG ATACGCGTTA TTGGGGGGTA
CTGAGTGTGG TGATGGATTG GGATTCATTG CTTTCAGCAA CCAGTATTTA CAGCTTTGGG
GAGCATTTTC AGGTTGCGAT TCGTGGTTTA GACAGCCGTG GCAGTGAGGG GGACGTGTTT
TTTGGAGAGC CTCGAGTATT TGAGCACGCT TTTGCACAAG AGAATGTCTA TTTCCCTTAC
GGAAGTTGGC GAATTGCGGT CGCTGAAAAG CAAGATTTAC TACAGCAGTT ATCTTGGTAT
ACCCGAAATG CAGTGCGCTT GTTGGGATAC TCGGTGTTAT TGGTATTGAT GGCAGGCTTT
GGCGTTATCA TGCGCCTTTA TCAAGTCGCG GAGGAGCGTG CGCTACATGA CCCTTTAACC
CACTTGCCGA ATCGGCGCTA TTTTATCTAT ACCATTGAAC ACTACTTTGA AAATGCTAAG
CGCTCTCATA GCGAAGGTAA CTTTGCTTTG TTGAACATTG ATATTGGCCG TTTTAAATCT
ATCAACGATT CCCATGGACA TAGCGCAGGC GATAAAGTGC TGGTGGCTTG TGCGGAAAGA
ATTAAATCGA GCCTGCGGGT TTCCGATCTG GTGGCGCGGA TTGGGGGGGA TGAGTTTCTC
GTGTTAATTC CACGAATTCA TCGTGAACAA GACGTGCTTA AAGTCAGTGA CAATATTTTA
AAAAGGATTT CTGAAACGCC CATCGTTTAT GACGACAAGC TTATCCATGT TCGTGTAAGT
ATCGGATATG CTTTGTATGA CCAGTCGTTT GCCACACCTG ATGAAATGTT CAAACTGGCC
GATGAACGTA TGTATACCGC TAAGCGTAGG CAAAACCCAC TCTATCGCTT TTGA
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| Protein sequence | MGLTSHKYKY VSIYFLALLF LGIAVIESLH ISHTRDLQEG LRQQAKEDLS IVRFQLEAEI
LGDIYTVKGL TTLLTLDPDL NIYQWEPLSA AVIRNSDHLR SLGIAPNDVV AFSYPLPQTN
ALLGLDYRTV PQQWQSIKKA REIKQTFVSG PVDLVQGGRA LVIREPIFYD PPKDTRYWGV
LSVVMDWDSL LSATSIYSFG EHFQVAIRGL DSRGSEGDVF FGEPRVFEHA FAQENVYFPY
GSWRIAVAEK QDLLQQLSWY TRNAVRLLGY SVLLVLMAGF GVIMRLYQVA EERALHDPLT
HLPNRRYFIY TIEHYFENAK RSHSEGNFAL LNIDIGRFKS INDSHGHSAG DKVLVACAER
IKSSLRVSDL VARIGGDEFL VLIPRIHREQ DVLKVSDNIL KRISETPIVY DDKLIHVRVS
IGYALYDQSF ATPDEMFKLA DERMYTAKRR QNPLYRF
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