| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0273 |
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| Symbol | |
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| ID | 5134284 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 309440 |
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| End bp | 310630 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 640530596 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001215114 |
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| Protein GI | 147672449 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCGAA TTTGGATGGA TAGCTTTGCT GGCAACCAAT TAAAAGAGAT GACAGAGATG
CGTTTTGCTC GTAAGCAGCA TATTGTCCTG ATCAGCTCTG GTGTTGCTAC CGCTATTTTT
CTTGGGTTTG CCCTTTACTA CTATTTTAAC CATCAACCCC TGTCATCCGG TTTATTGTTA
TTAAGCGGTA TTGTCACCTT ATTGAATATG ATTTCGCTGA ATCGTCACCG CGAATTACAC
ACTCAAGCCG ATTTAATTCT GTCATTAATT CTGCTCACTT ATGCGCTGGC CTTAGTCAGC
AATGCTCAGC ATGAATTATC GCATCTCTTA TGGTTATATC CGCTCATCAC CACTTTAGTC
ATGATTAACC CTTTTCGGTT AGGCTTGGTT TACAGTGCAG CGATATGCTT AGCGATGACC
GCCTCTATCC TTTTTAATCC GGCACAAACT GGCTCGTACC CTATTGCACA GACCTATTTT
TTAGTAAGTC TATTTACGCT GACGATTATC TGTAATACCG CTTCTTTCTT TTTCTCAAAA
GCGATCAATT ATATTCATAC CCTATACCAA GAAGGTATTG AAGAGTTGGC TTATCTTGAT
CCGTTAACGG GCTTAGCCAA TCGTTGGAGC TTTGAAACTT GGGCCACAGA AAAGCTCAAA
GAACAACAGA GTTCGAATAC CATTACCGCG CTTGTTTTTC TGGATATTGA TAATTTCAAA
CGCATTAATG ACAGTTACGG CCATGATGTT GGCGATCAGG TGTTAAAACA TTTTGCACAC
CGTCTACGCA ATAATATTCG TAATAAAGAT CGAGCCACCA ATCAACATGA TTATTCCATT
GCTCGATTTG CTGGTGATGA GTTTGTGCTC TTGTTATATG GTGTGCGAAA TTTGCGTGAT
CTCGATAATA TTCTCAACCG TATCTGTAAT CTCTTCGTCG ACCGCTATCC TGAGACGGAT
ATGCTCAACA ACCTCACGGT GAGTATAGGG GCAGCTATTT ATCCCAAAGA TGCGATCACT
CTGCCGGAAC TAACCCGCTG CGCAGATAAA GCCATGTATG CCGCTAAACA CGGTGGAAAA
AATCAGTACC GCTATTACCA TGATGCCGCT TTCCCTCCGG CTGTAGAAAC CGTATTAGGC
AGTCAGCCCG TTGAGGCTCC TAACGTAACT CCACTGAAAA AAGCGCACTA A
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| Protein sequence | MDRIWMDSFA GNQLKEMTEM RFARKQHIVL ISSGVATAIF LGFALYYYFN HQPLSSGLLL
LSGIVTLLNM ISLNRHRELH TQADLILSLI LLTYALALVS NAQHELSHLL WLYPLITTLV
MINPFRLGLV YSAAICLAMT ASILFNPAQT GSYPIAQTYF LVSLFTLTII CNTASFFFSK
AINYIHTLYQ EGIEELAYLD PLTGLANRWS FETWATEKLK EQQSSNTITA LVFLDIDNFK
RINDSYGHDV GDQVLKHFAH RLRNNIRNKD RATNQHDYSI ARFAGDEFVL LLYGVRNLRD
LDNILNRICN LFVDRYPETD MLNNLTVSIG AAIYPKDAIT LPELTRCADK AMYAAKHGGK
NQYRYYHDAA FPPAVETVLG SQPVEAPNVT PLKKAH
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