Gene VC0395_0237 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0237 
Symbol 
ID5134364 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand+ 
Start bp270113 
End bp270742 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content53% 
IMG OID640530560 
Producthypothetical protein 
Protein accessionYP_001215078 
Protein GI147672360 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones49 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGATG TTTCGGTATT ACCGGTTTAT CTCACCGCGG TATTGGCGCT GTTGCTGATC 
CCAGGGCCAG ATATGCTGCT GATTGCGAGC TCTAGTATGA GCTACGGACG CCGAGTCGGT 
TTGTTTGCCA GCTTGGGCAA TGCCACATCA GGGATGATTT TAACCTTACT CGCGGCGCTC 
GGGGTTTCCG CACTGATTGC GATGAACCCG TTGGCGCTCA ATGTGCTGCA TTTGTTGGGG 
GGAGCATACC TGCTCAAAAT GGCGTGGGAT TGCCTACGCG CCGATGCAGC GCAAGCGCCC 
ACCTTGGATG AGGCACAAGC GGTAGCAAAA ACCTTTTACC AACGCGCTTT AGTGAGCAAT 
TTGCTGAACC CCAAAGCCTT GGTGTTCTTT GTGCTGTTTT TGCCGCAGTT TGTTTCAACC 
AATATCGCAG CCAGCTCCGC CGAACAGATG TTCGCGCTGG GTATGGTGCT GAATGTGTGC 
GGCTTGCTGT TTAATCTGCT GCTAGTGGCT TTGATTGGTG TGTTTGGTCG CTCGCTAGTC 
GATAATCAGC GTTTTCGCAC TTACCAGCAC AAAGTGATGG GCGCGGTGTT TTTGCTGCTA 
GCGCTCTGGA TGCTCAGCGA TTTTGTGTGA
 
Protein sequence
MIDVSVLPVY LTAVLALLLI PGPDMLLIAS SSMSYGRRVG LFASLGNATS GMILTLLAAL 
GVSALIAMNP LALNVLHLLG GAYLLKMAWD CLRADAAQAP TLDEAQAVAK TFYQRALVSN 
LLNPKALVFF VLFLPQFVST NIAASSAEQM FALGMVLNVC GLLFNLLLVA LIGVFGRSLV 
DNQRFRTYQH KVMGAVFLLL ALWMLSDFV