| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0225 |
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| Symbol | nhaD |
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| ID | 5134510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 259913 |
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| End bp | 261346 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640530548 |
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| Product | Na+/H+ antiporter |
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| Protein accession | YP_001215066 |
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| Protein GI | 147672236 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1055] Na+/H+ antiporter NhaD and related arsenite permeases |
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| TIGRFAM ID | [TIGR00775] Na+/H+ antiporter, NhaD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 46 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGGCC GGATCGCACT ACTTTCTCTT ACGCTTTTTT CACCACTCAG TTTAGCGTCT
ACCCCAGATG GACAAGCTTT AGATTTCACC CATTCGACGA TCGGCTATGC CGCACTCCTC
ATTTTCGCCA TCGCTTATAC CTTGGTCATG CTGGAAGAGT ATTTGCAACT ACGTAAATCG
AAACCGGTCT TGCTGGCTGC TGGGCTGATT TGGGCCATGA TTGGCTATGT TTACCAACAA
ACAGGCTCGA CCGAGGTAGC TCGTCAGGCC TTAGAACACA ATTTGCTTGA ATACGCAGAG
CTGCTGCTGT TTTTATTGGT CGCCATGACC TACATCAGTG CGATGGAAGA GCGGCGTCTG
TTTGATGCAC TCAAAGCGTG GATGATCAAC AGAGGCTTTA ATTTTCACAC TCTATTTTGG
ATAACGGGTT GGTTGGCGTT TTTCATTTCC CCGATTGCCG ATAACCTCAC CACGGCGTTA
TTGATGTGTG CCGTGGTCAT GAAAGTCGGT GGTGAAAACC CTAAATTCGT CAGTTTAGCT
TGCATTAATA TCGTGATTGC TGCCAACGCG GGAGGAGCCT TCAGTCCCTT TGGCGATATC
ACCACTCTTA TGGTGTGGCA GGCTGGGCAT GTTAGCTTCC TTGAGTTTAT GGATCTGTTT
CTCCCATCCT TAGCCAACTA TTTGGTGCCT GCCTTGGTCA TGTCGCTCTT TGTCCCGCAT
CAAACGCCTT CCAGCATCCA AGAAGTGGTC GAGCTTAAAC GCGGAGCCAA ACGCATCGTC
GTTCTGTTTC TCTTTACCAT CCTCTCGGCC ATCGGTTTCC ATGCATTTTT CCACTTCCCG
CCAGTGATCG GCATGATGAT GGGACTCGCC TATTTGCAGT TTTTTGGCTA TTTCCTACGT
AAAACGCTGG CAAGATCACT GGCTAAGAAA ACGGCGATTG CCATGGCGAA GAATGATGAA
GCCGCACTTA AACGTATTGG TTCCGTGGTG CCTTTTGATG TCTTTCGCAG CATTTCTCAC
GCCGAATGGG ACACTTTACT GTTTTTCTAT GGGGTCGTGA TGTGTGTCGG AGGCTTGAGC
TTACTCGGCT ATCTAGGTTT AGTGTCGGAA ATCCTCTATA CCGAATGGAA CCCCATCTGG
GCTAACGTAC TGGTTGGGCT GCTTTCTTCG GTGGTCGATA ACATTCCTGT CATGTTTGCT
GTACTGTCGA TGCAGCCCGA AATGTCTCTC GGCAACTGGC TACTGGTCAC TCTCACCGCA
GGAGTCGGCG GCAGTTTGCT ATCGATTGGC TCTGCAGCAG GTGTGGCGCT CATGGGCGCG
GCTCATGGCA AATACACGTT CTTGAGCCAC TTGAAATGGA CTCCCGTCAT TCTGCTTGGT
TATGTGGTCA GTATCGTGTT GCATTTGCTG CTCAATCATC AATCATTCAC ATAA
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| Protein sequence | MTGRIALLSL TLFSPLSLAS TPDGQALDFT HSTIGYAALL IFAIAYTLVM LEEYLQLRKS
KPVLLAAGLI WAMIGYVYQQ TGSTEVARQA LEHNLLEYAE LLLFLLVAMT YISAMEERRL
FDALKAWMIN RGFNFHTLFW ITGWLAFFIS PIADNLTTAL LMCAVVMKVG GENPKFVSLA
CINIVIAANA GGAFSPFGDI TTLMVWQAGH VSFLEFMDLF LPSLANYLVP ALVMSLFVPH
QTPSSIQEVV ELKRGAKRIV VLFLFTILSA IGFHAFFHFP PVIGMMMGLA YLQFFGYFLR
KTLARSLAKK TAIAMAKNDE AALKRIGSVV PFDVFRSISH AEWDTLLFFY GVVMCVGGLS
LLGYLGLVSE ILYTEWNPIW ANVLVGLLSS VVDNIPVMFA VLSMQPEMSL GNWLLVTLTA
GVGGSLLSIG SAAGVALMGA AHGKYTFLSH LKWTPVILLG YVVSIVLHLL LNHQSFT
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