| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0208 |
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| Symbol | |
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| ID | 5135048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 241051 |
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| End bp | 242427 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640530531 |
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| Product | putative extracellular solute-binding protein |
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| Protein accession | YP_001215049 |
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| Protein GI | 147672363 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.0085185 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGAACA AGTGGATTGG AGCTCTAGGT CTCCTACTAT CGGGTCAGTT GATGGCCAGC
GAATTGGTGA TTGAAAGTTG GCGCGCCGAT GATAAGGCGC TGTGGGAGCA AAAAATCATC
CCCGCTTTTG AAGCTGCGAA TCCTGGCATC AAAGTGAAAT TTAACCCAGT GCCGAATGTG
AACTATACGC CAACGTTGTG GGAAAACTTA AAAGCTGGAA AAGCGGGAGA TTTGATCACT
TGCCGCCCGT TTGATGATTC TTTGGCACTT TTCAAAGCCG GGCACTTGGC AGAAATCACC
GAAATGGCTG GGATGGAAAA TTTCCCGAGC TTTGCCCAAG CGCCTTGGCA AACCGATTCT
GGGGCACAAA CCTTCTGTGT CCCTATGGCT TCAGTGATAC ATGGTTTTTT CTATAATAAG
AAAATTTTCA ATGAGTTAGG GTTGAGTGTG CCGCAAACCC GTGAACAGTT TTTTACCGTT
CTCGATAAAG TGAAAGCGGA TGGACGTTAT ATCCCCTTAT CGATGAGTGG TTCTGAAAGC
TGGGTCGCAT CTGAATTGGG CTATCAAAAT ATCGGCCCCA ATTATTGGAA AGGGGAAGAT
GGTCGTTTGG CTTTGATTAA TGGCCAAGAG CATTTGGACG ATTCACAGTA CGTGAAGGTG
TTTGAAGAGC TAGCGCGTTG GCGAGCCTAT TTAGGTGAGG ACGGTGAGCT GAGGGATTAT
GGCACCAGTA ATGAGCTCTT TACCTCGGGT AAAGCCGCGC TTTATGTGGC GGGTTCGTGG
GAAATTGCAC CATTTACCGA TAAAGTCGAT TTTGGCGTTA TGCGCCCTCC TGTCGCAAAG
CAAGGGGATG GCTGTTTCTT TACTGACCAC ACTGACATCG GTATGGGGAT GAACCCGGCC
AGCAAAAATC CGCAAGCAGC GATGGCCTTT TTACAATGGT TAACCACACC AGAGTTTGCT
GAGTTGTATA CCAATTCGCT ACCGGGGTTT TTCTCGTTGT CTAACCACTT CTTTGACGTC
ACCAATCCTG CGGCGCGTGA AATGATGGAG TGGCGCGATC AATGTGACTC AACCATTCGG
GTCGCAACGC AAATTCTTTC GCGTGGTCAA CCTAAGTTAG GTGATGAGCT TGCCGAAGTG
AGCCAAGCGG TATTGGTTGG CAAAATGACA CCAACCGCTG CGGCAGAGCG CCTAGAGCAA
GGTTTAAAAC GCTGGTACGC TCCCCATCAA ACTCGTAAAG CGAAAGAACA AGAGTGTCAA
TGTGTTGAGC CCATATCTCC GACGACGCGC CTAAATACAC TTCCTGTTGT TGATATTGCT
CCTGTCGTTG CAAGCGATCC TGTACCCCCA ACGGAGGCCA CAATATTGTC GGAATAA
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| Protein sequence | MTNKWIGALG LLLSGQLMAS ELVIESWRAD DKALWEQKII PAFEAANPGI KVKFNPVPNV
NYTPTLWENL KAGKAGDLIT CRPFDDSLAL FKAGHLAEIT EMAGMENFPS FAQAPWQTDS
GAQTFCVPMA SVIHGFFYNK KIFNELGLSV PQTREQFFTV LDKVKADGRY IPLSMSGSES
WVASELGYQN IGPNYWKGED GRLALINGQE HLDDSQYVKV FEELARWRAY LGEDGELRDY
GTSNELFTSG KAALYVAGSW EIAPFTDKVD FGVMRPPVAK QGDGCFFTDH TDIGMGMNPA
SKNPQAAMAF LQWLTTPEFA ELYTNSLPGF FSLSNHFFDV TNPAAREMME WRDQCDSTIR
VATQILSRGQ PKLGDELAEV SQAVLVGKMT PTAAAERLEQ GLKRWYAPHQ TRKAKEQECQ
CVEPISPTTR LNTLPVVDIA PVVASDPVPP TEATILSE
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