| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0179 |
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| Symbol | speF |
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| ID | 5134090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 209705 |
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| End bp | 211867 |
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| Gene Length | 2163 bp |
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| Protein Length | 720 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640530502 |
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| Product | ornithine decarboxylase |
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| Protein accession | YP_001215020 |
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| Protein GI | 147671454 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTCAT TAAAAATTGC TACGAGTTTA TCGGTTCGCT CTTGCTTCAC AACCCAACGT
GAAGTGGTGG ATGTACTGAA AACCGACTTC TGTGACATTG GTGCGGCGGT GGTTTCCGTC
GAAGACGTAC AAAACGGCAT CATAGATAAA ATGAATGCGA CCGGTTTGAA ACTGCCGATC
TTTGTTGCTG TGTGCTGCGA AGACCAATTC CCAGATGATT TTTGCGCCGA TATCACCGGG
GTATTTGAGC TGTGTGATGC CAAAGTCGAG TTCTACGGTA AGCAAGTGGA AACTGCCGTG
CGTCGTTATC AAGAAAGTTT GTTGCCACCT TTCTTTGGTA CATTGAAAAA ATACGTGGAC
ATGGGTAACT CCACTTTTGC TTGCCCAGGC CATCAAGGTG GTCAGTTCTT CCGTAAGCAC
CCGGTTGGTC GCCAGTTTTT TGATTTCTTT GGTGAAACCT TGTTCCGCTC TGATATGTGT
AACGCGGACG TACGTTTGGG CGACTTGCTG ATCCATGAAG GTGCACCGCA TGATGCACAG
GCTTACGCCG CGAAAGTGTA CAACGCGGAT AAAACCTACT TCGTACTTAA CGGGACTTCA
GCTTCCAACA AAGTGGTGTG TAACGCCCTG CTGACACCGG GAGATCTGGT GCTGTTTGAT
CGCAACAACC ATAAATCCAA CCACCACGGT GCGTTAATTC AAGCGGGTGC GACACCGGTT
TACTTAGAAA CGGCGCGTAA CCCATTCGGT TTTATCGGTG GGATTGATAC GCACTGCTTT
AACGAATCTT ACCTACGTGA TGCGGTACGT AATGTCGACC CAAGCCGCGC GGAAGCGAAA
CGCCCATTCC GTCTTGCCAT CATTCAGCTC GGTACTTACG ACGGCACGAT TTACAACGCG
CGTCAGGTGG TGGATCGCAT CGGTCATTTG TGTGACTACA TCCTGTTTGA CTCAGCATGG
GTGGGCTATG AACAGTTCAT TCCCATGATG AAAGATTGCT CACCACTTCT TCTCGATCTG
AAGCCTGAAG ATCCGGGCAT TATCGTCACT CAGTCTGTAC ATAAACAGCA GGCAGGTTTC
TCGCAAACTT CGCAAATCCA CAAGAAAGAT CACCACATTA AAGGCCAAGA GCGTTACTGC
AACCATAAAC GCTTTAACAA TGCCTTTATG CTGCACGCTT CAACCAGCCC ATTCTACCCG
CTGTTTGCGG CGCTCGATGT GAACGCCAAA ATGCACGAAG GGGATAGTGG CCGCTACCTA
TGGCGCGAAG CGGTGAAAAC CGGTATCGAA GCCCGTAAGC TACTGATGAA AAAATGCAAA
TACATCAAGC CGTTCATTCC ACCAATGATC GAGGGTAAAC CTTGGCAATC TCACCCCACC
GAGCAAATTG CCGATGATTT GCGTTTCTTT GAATTTGAAC CGGGTCAGAA ATGGCATGCG
TTTGAAGGTT ACGAACATGG TCAGTATTTC GTTGACCCTT GTAAGTTCCT GCTCACCACA
CCGGGGATTG ACCCAGAAAC CGGCGAATAC GAGCACTTTG GTATTCCGGC CACCATACTG
GCCAACTTCC TGCGTGAGAA CAACATCATC CCAGAGAAGT GCGATTTGAA CTCGATCCTC
TTTTTGCTCA CCCCAGCCGA AGATATGGCG AAGATGCAGC ATTTAGTGGC ACAAATTGCT
CGTTTTGAAC GCTTGATTGA AGAAGATGCA CCACTGAGCG AAGTATTGCC GAACGTGTAC
CGTGCGAATC GCGAACGTTA CAAAGGCTAC ACCATCCGTC AGTTGTGTCA GGAAATGCAC
GATCTGTATG TCAGCCATGA TGTGAAACAG CTGCAAAAAG AGATGTTCCG CGCGCGTTAT
TTCCCACGTG CGGTAATGAA CCCACAAGAA GCGAACTTGG CCTTTGTACG TGGTCAGGTT
GAGCTAGTCC CACTGCGTGA AGTGGAAGGC CGTATCGCCG CTGAAGGCGC ACTGCCTTAC
CCTCCGGGTG TGTTGTGTGT GGTTCCGGGA GAAATATGGG GCGGTTCAGT ACAGCGTTAC
TTCCTCGCTC TAGAAGAAGG CATTAACTTG CTGCCGGGTT TTGCGCCTGA ATTGCAAGGG
GTGTATTTGG AGCCGACAGG CGAGGGACGA GTGCAAGCCA TGGGCTATGT ACTGAAACGT
TAA
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| Protein sequence | MNSLKIATSL SVRSCFTTQR EVVDVLKTDF CDIGAAVVSV EDVQNGIIDK MNATGLKLPI
FVAVCCEDQF PDDFCADITG VFELCDAKVE FYGKQVETAV RRYQESLLPP FFGTLKKYVD
MGNSTFACPG HQGGQFFRKH PVGRQFFDFF GETLFRSDMC NADVRLGDLL IHEGAPHDAQ
AYAAKVYNAD KTYFVLNGTS ASNKVVCNAL LTPGDLVLFD RNNHKSNHHG ALIQAGATPV
YLETARNPFG FIGGIDTHCF NESYLRDAVR NVDPSRAEAK RPFRLAIIQL GTYDGTIYNA
RQVVDRIGHL CDYILFDSAW VGYEQFIPMM KDCSPLLLDL KPEDPGIIVT QSVHKQQAGF
SQTSQIHKKD HHIKGQERYC NHKRFNNAFM LHASTSPFYP LFAALDVNAK MHEGDSGRYL
WREAVKTGIE ARKLLMKKCK YIKPFIPPMI EGKPWQSHPT EQIADDLRFF EFEPGQKWHA
FEGYEHGQYF VDPCKFLLTT PGIDPETGEY EHFGIPATIL ANFLRENNII PEKCDLNSIL
FLLTPAEDMA KMQHLVAQIA RFERLIEEDA PLSEVLPNVY RANRERYKGY TIRQLCQEMH
DLYVSHDVKQ LQKEMFRARY FPRAVMNPQE ANLAFVRGQV ELVPLREVEG RIAAEGALPY
PPGVLCVVPG EIWGGSVQRY FLALEEGINL LPGFAPELQG VYLEPTGEGR VQAMGYVLKR
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