| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0169 |
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| Symbol | putA |
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| ID | 5134024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 198358 |
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| End bp | 201477 |
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| Gene Length | 3120 bp |
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| Protein Length | 1039 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640530492 |
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| Product | bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
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| Protein accession | YP_001215010 |
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| Protein GI | 147671673 |
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| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
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| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
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| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0936263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTACAG CAACCGATGT GTTGAACGCA GCGTTTATCG AGCAGCCGCT GGATAAACTA
TGGTCGCTGA TCTCGCCACT GTATATGGTG GACGAATCCC AATGGCTGAC CCAATTATTG
CCTCTCGCAA CGCCAAGCCA TGCTGAAAAA GCAGCAATGG CAGAGAAAAC CACGCGCTTA
ATTGAAGCGA TCCGCAGCGA TAAAAAAGCG GTGCAGATGA TTGATGCACT GCTTTTGGAA
TACAGCTTGG ATACCCAAGA AGGTATTTTG CTGATGTGTT TGGCGGAAGC GTTAATGCGT
ATTCCTGATG CGGAAACGGC TGACGCGTTT ATTAAAGACC GCTTGGGTGT TGCGGATTGG
AAATCCCACC TGAAAAATTC AGATTCTGTA TTCGTGAATG CTTCAACTTG GGGCTTGATG
CTGACAGGTA AAGTGATTGG CTTGGCAGAT GGAGATATCG CAAGCCCAGT GCAAGCGGTG
AATCGCTTAG TGAATAAGCT GACTGAACCT GTGATCCGCA AAGCCATGCA TCAAGCCATG
AAGATCATGG GCCATCAATT TGTGCTTGGA CGCACCATTG AAGAAGCGCA GAAAAATGGT
CGCCCGATGC GTGATAAGGG TTATACCTAT TCGTTTGATA TGTTGGGTGA AGCGGCGCTG
ACTTCTGCCG ATGCGCACAA GTATTTCAAA GATTACTTGA TGGCGATTGA AGCGGTAGGC
CGCGATAAAT ATGGTCTGGA GACCAGCCCT GCGCCGTCGG TCTCGATCAA ACTTTCTGCT
TTGCATCCTC GCTACCAAGT GGCGAATGCC GATCGCGTGA TGACCGAGCT GTACAGCACA
CTTATTCAAC TGCTTGAGCG CGCGAAAGAG CTGGATGTCG CCATCACGAT TGATGCCGAA
GAAGCGGATC GTTTAGAGCT GTCACTGCAT CTGTTTGAAA AGCTCTACCG CAGCGACACG
CTGCGTGGTT GGGGTAAGTT TGGTTTGGTG GTTCAAGCCT ACTCCAAACG TGCGTTGCCA
GTATTGGTTT GGCTGACGGC TCTCGCGAAA GAGCAGGGCG ATCTCATTCC TGTGCGTTTA
GTCAAAGGTG CGTATTGGGA CAGCGAAATT AAGATGTCAC AGCAACGAGG CTTTATTGGC
TATCCGGTTT ATACGCGCAA AGAAGCGACC GATGTTTCTT ATCTCGCTTG TGCTCGTTTC
TTACTGAGCG AATCGGTACG CGGCAATCTG TTCCCGCAAT TTGCTAGCCA TAACGCGCAA
ACCGTTACCG CGATTGCGGT GATGGCACAA CACAAAGATT TTGAATTTCA GCGTTTGCAT
GGCATGGGGG ATGCGCTTTA TCACCATGCG AAAGCCGCTT ATCAGCAGTC GGTACGGATT
TATGCCCCCG TGGGCAGCCA TAAAGATCTG CTGCCCTATC TGGTGCGTCG ATTATTGGAA
AATGGTGCAA ACAGTTCGTT CGTACACCGC TTGGTGGACT CGCGCTGCCC GATTGGTGCG
TTGACTCAGC ATCCAGTCGA TATGCTGCTT GCGTTTGAAA CCTTAAATAA CCGTAAGATC
CCACTGCCAA CGGAGATTTT TGCCGAGCGC AAAAACTCAT TGGGGATCAA CATTGATATT
GAGAGTGAAG CGAAGCCGTT TGAAGCTCAG ATCCACGCTT GGTTAGATAA GACGTGGCAT
GCGGTACCGA TCATTGGCGG GCACTCTTAT TACGAAAGCA TGATCAAGGC GGATCACAGT
GCAGAGCCCG TCACTGCGCC TTACGATCGT CGTATTCAAG TCGGTCAGGT GTTTCACGCT
AACCTTGATC ATGTTTCCGA TGCGATCGAC TCTGCTCAAC AAGCTTTTGC AACTTGGAAT
GCGCTTGATG CCAAAGTGCG TGCGAGTAAA TTGGATGCGC TGGCGGATCT GCTTGAACTG
CATATGCCTG AGTTGGTGGC CTTGTGTCAC CAAGAAGCAG GCAAAACCAT TCACGACAGC
ATTGATGAAG TGCGTGAAGC GGTCGATTTC TGTCGTTATT ACGCCAAACA AGTCGATGTG
CTGGGCGAGT TCAGTGTCGA AAGCTTTGAT GGATCAACAC GTCGTGTTAG CCGTCAAGGT
CGTGGTGTAT TTGTGTGTAT CAGCCCGTGG AACTTCCCGC TGGCGATTTT CCTTGGCCAA
ATCAGTGCTG CCTTGGTGGC CGGAAATACC GTGATTGCCA AACCTGCCGA GCAAACCAGT
TTGATCGCGT ATCGCGCGGT TGAGCTGATG CAAGAAGCGG GTTTCCCTGC TGGAACCATC
CAACTTTTGC CGGGACGCGG TGCCGATATC GGCAGCGCAC TCACTTCTCA TCCGGCCATC
GCGGGTGTGG CGTTTACTGG CTCGACCGCC ACGGCGCAGC GCATTAACCA AACGTTAGCG
CAACGTGAAG CGGCTCCGGT ACCATTTATT GCAGAAACTG GCGGTCAAAA CGCCATGATT
GTCGACAGTA CCGCGCTGCC AGAGCAAGTG GTGCGTGATG TGCTGCGTTC CGCTTTTGCC
TCTGCTGGCC AACGCTGTTC GGCACTGCGT GTGCTGTTTG TACAGCAGGA TATTGCCGAT
CGCGTGATTA CTTTGATTCA GGGCGCGATG CAAGAGCTGA AAGTCGGTGT GCCACATCTG
CATCAAACCG ATGTCGGTCC AGTGATTGAT GAAAAAGCCA AACAGAAACT GTTGGCGCAC
ATTGAACACA TGAGCCAAAC CCAGAAGAAA ATCGCTCAGC TTACTTTGGA TGACGCTTGC
CAACATGGCG ACTTTGTTGC GCCAACCGCC TTTGAAATTG ATGATATTGC CGCGCTGAGT
GAAGAGCAGT TTGGCCCGAT CTTGCACATT GTTCGGTTTA AAGCACGCGA ATTGGCGCAG
ATCGTCGACA AAATCAACCA AACTGGTTTT GGTTTAACCA TGGGCATTCA TAGCCGTAAC
GAAACCACGT ATCGCTGGAT TGAAAAACAT GCTCGAGTGG GCAACTGCTA TATCAACCGC
GATCAAGTCG GGGCTGTGGT GGGGGTACAA CCGTTTGGCG GACAAGGCTT GTCAGGAACG
GGGCCGAAAG CGGGCGGGCC TCACTATCTT TACCGCTTTA CTCAAGTGCA ATACCAATAA
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| Protein sequence | MFTATDVLNA AFIEQPLDKL WSLISPLYMV DESQWLTQLL PLATPSHAEK AAMAEKTTRL
IEAIRSDKKA VQMIDALLLE YSLDTQEGIL LMCLAEALMR IPDAETADAF IKDRLGVADW
KSHLKNSDSV FVNASTWGLM LTGKVIGLAD GDIASPVQAV NRLVNKLTEP VIRKAMHQAM
KIMGHQFVLG RTIEEAQKNG RPMRDKGYTY SFDMLGEAAL TSADAHKYFK DYLMAIEAVG
RDKYGLETSP APSVSIKLSA LHPRYQVANA DRVMTELYST LIQLLERAKE LDVAITIDAE
EADRLELSLH LFEKLYRSDT LRGWGKFGLV VQAYSKRALP VLVWLTALAK EQGDLIPVRL
VKGAYWDSEI KMSQQRGFIG YPVYTRKEAT DVSYLACARF LLSESVRGNL FPQFASHNAQ
TVTAIAVMAQ HKDFEFQRLH GMGDALYHHA KAAYQQSVRI YAPVGSHKDL LPYLVRRLLE
NGANSSFVHR LVDSRCPIGA LTQHPVDMLL AFETLNNRKI PLPTEIFAER KNSLGINIDI
ESEAKPFEAQ IHAWLDKTWH AVPIIGGHSY YESMIKADHS AEPVTAPYDR RIQVGQVFHA
NLDHVSDAID SAQQAFATWN ALDAKVRASK LDALADLLEL HMPELVALCH QEAGKTIHDS
IDEVREAVDF CRYYAKQVDV LGEFSVESFD GSTRRVSRQG RGVFVCISPW NFPLAIFLGQ
ISAALVAGNT VIAKPAEQTS LIAYRAVELM QEAGFPAGTI QLLPGRGADI GSALTSHPAI
AGVAFTGSTA TAQRINQTLA QREAAPVPFI AETGGQNAMI VDSTALPEQV VRDVLRSAFA
SAGQRCSALR VLFVQQDIAD RVITLIQGAM QELKVGVPHL HQTDVGPVID EKAKQKLLAH
IEHMSQTQKK IAQLTLDDAC QHGDFVAPTA FEIDDIAALS EEQFGPILHI VRFKARELAQ
IVDKINQTGF GLTMGIHSRN ETTYRWIEKH ARVGNCYINR DQVGAVVGVQ PFGGQGLSGT
GPKAGGPHYL YRFTQVQYQ
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