| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0160 |
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| Symbol | |
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| ID | 5134980 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 187754 |
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| End bp | 189664 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640530483 |
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| Product | hypothetical protein |
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| Protein accession | YP_001215001 |
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| Protein GI | 147671848 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCTAT ACAAACAACT AGTCGCAGGG ATGATTGCGG TGTTTATTCT GTTGTTGATT
TCGGTTTTTA CTATCGAATT CAACACCACT CGCAACAGTC TTGAACAACA ACAACGCTCT
GAAGTCAACA ACACCATAAA TACGGTGGGT TTGGCTTTAG CGCCTTATCT GGAGAAGAAA
GACACCATTG CGGTAGAGTC AGTCATCAAT GCGCTGTTTG ATGGCAGTAG TTACTCGATC
GTACGTCTGA TTTTTCTCGA TGACGGTACG GAAATCCTGC GCTCATACCC TATCCAACCC
AATAATGTGC CGGCTTGGTT TACTCAGTTA AATCTGTTTG AGCCCATCCA TGATCGGCGT
GTTGTAACCA GTGGTTGGAT GCAATTGGCG GAAGTGGAAA TCGTCAGCCA TCCTGGTGCG
GCTTACGCTC AACTCTGGAA AGCATTAATT CGTTTAAGTA TCGCGTTTTT GGCGATCTTA
GTGATTGGTA TGTTTGCCGT CGCCTTCATT TTGAAGCGCT CTCTAAGACC ACTACAACTC
ATCGTCAACA AAATGGAGCA GGTTGCTAAC AACCAATTTG GTGAGCCTCT ACCGCGCCCC
AACACTCGAG ATCTGATTTA TGTAGTAGAT GGCATCAATA AGATGTCTGA ACAGGTCGAG
AAAGCGTTTA AAGCCCAAGC CAAAGAGGCG CAGCAACTGC GTGAACGTGC TTATCTTGAC
CCAGTTTCTC ATCTTGGCAA CCGAGCATAC TACATGAGCC AATTGAGTGG CTGGCTCTCT
GAAAGCGGCA TCGGTGGTGT AGCCATTCTA CAAGCTGAAT TCATCAAAGA GCTTTATGAA
GAGAAGGGCT ATGAAGCCGG TGATGGCATG GTGCGCGAAC TGGCGGATCG CCTTAAAAAC
TCCATCACCA TCAAGGACAT CTCTATCGCT CGTATCTCCA CTTACGAGTT CGGTATCATC
ATGCCTAACA TGGATGAAAC TGAGCTCAAA ATCGTGGCAG AGAGCATCAT CACTTGTGTG
GACGACATTA ACCCTGATCC TACTGGTATG GCGAAAGCCA ATTTATCGCT TGGCGTGGTA
AGCAATAAGC GTCAATCCAG CACCACAACG CTCTTGTCCC TGCTGGATAA TGCGTTAGCT
AAAGCGAAAT CCAATCCTGA GCTGAACTAC GGCTTTATTA GCAGTGATAC TGATAAAATC
ATCTTGGGCA AACAGCAGTG GAAAACTCTG GTCGAAGAGG CAATCCATAA CGACTGGTTT
ACTTTCCGCT ACCAAGCCGC CAACAGCAGT TGGGGAAAAA CATTCCATCG CGAGGTCTTT
TCTGCGTTTG AGAAAGACGG CGTGCGTTAC ACGGCAAACC AATTCTTGTT TGCCCTTGAA
CAGCTCAATG CTAGCCATAT CTTCGATCAG TACGTGATTG AACGTGTGAT TCAACAGCTT
GAAAAAGGCG AACTGACCGA TCCACTCGCG ATCAACATCG CACAAGGCAG TATCTCTCAA
CCGAGCTTTA TCCGTTGGAT CAGCCAAACC TTAAGCAAGC ATCTTTCTGT GGCCAACTTA
CTGCATTTTG AGATCCCAGA AGGCTGTTTC GTCAATGAAC CGCATTACAC TGCGCTATTT
TGTAACGCAG TACGCAATGC AGGGGCGGAC TTTGGGGTAG ACAACTACGG ACGTAACTTC
CAATCTCTCG ACTACATCAA CGAGTTCCGT CCTAAATACG TCAAACTGGA TTATCTATTT
ACTCACCATT TGGATGATGA ACGCCAGAAA TTTACCCTGA CCTCAATCTC GCGCACCGCG
CATAACTTAG GGATCACCAC CATCGCATCA CGGGTTGAAA CACAGACTCA GCTCGATTTT
CTTTCAGAAC ATTTCATCGA AGTCTTCCAA GGCTTCATTG TTGATAAGTA A
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| Protein sequence | MTLYKQLVAG MIAVFILLLI SVFTIEFNTT RNSLEQQQRS EVNNTINTVG LALAPYLEKK
DTIAVESVIN ALFDGSSYSI VRLIFLDDGT EILRSYPIQP NNVPAWFTQL NLFEPIHDRR
VVTSGWMQLA EVEIVSHPGA AYAQLWKALI RLSIAFLAIL VIGMFAVAFI LKRSLRPLQL
IVNKMEQVAN NQFGEPLPRP NTRDLIYVVD GINKMSEQVE KAFKAQAKEA QQLRERAYLD
PVSHLGNRAY YMSQLSGWLS ESGIGGVAIL QAEFIKELYE EKGYEAGDGM VRELADRLKN
SITIKDISIA RISTYEFGII MPNMDETELK IVAESIITCV DDINPDPTGM AKANLSLGVV
SNKRQSSTTT LLSLLDNALA KAKSNPELNY GFISSDTDKI ILGKQQWKTL VEEAIHNDWF
TFRYQAANSS WGKTFHREVF SAFEKDGVRY TANQFLFALE QLNASHIFDQ YVIERVIQQL
EKGELTDPLA INIAQGSISQ PSFIRWISQT LSKHLSVANL LHFEIPEGCF VNEPHYTALF
CNAVRNAGAD FGVDNYGRNF QSLDYINEFR PKYVKLDYLF THHLDDERQK FTLTSISRTA
HNLGITTIAS RVETQTQLDF LSEHFIEVFQ GFIVDK
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