| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0159 |
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| Symbol | |
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| ID | 5134916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 185625 |
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| End bp | 187739 |
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| Gene Length | 2115 bp |
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| Protein Length | 704 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640530482 |
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| Product | toxin secretion ATP-binding protein |
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| Protein accession | YP_001215000 |
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| Protein GI | 147671958 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGATA CGTTACTCAA TTCGCTGGTG TACGTAAGCC GTTATTATGG TTTAGCGAAT
TCTCCTGAAG CACTGATCAA CGGCTTACCG TTGGCTGACG GCAAGCTCAC GCCTTTTCTG
TTTCCTCGCT CGGCGGAAAG AGCTGGGCTG ATCGCAAAAG AAAACCGCGC GCCGTTAGAC
CAAATTCCTC ATCTGGTGTT TCCTGTGGTA TTGCTGCTCA AAGGCGGTGA GGCCTGCGTA
CTCAATAGCA TCAATCAGGA AACGCAAGAG GCTGAAATTG TTACCGCAGA GTCGGGGTTA
GTCCCCGTCG CTTACTCGCT CAGTGATTTA GAAGCGATGT ATATTGGCCG TTACTTTATG
GTCAAAAAGC AGTTTCGCTT TGATGAACGC TCACCAGAAG TCCTGAAACC CAGAGATGGG
CACTGGTTTT GGAGCACCAT CTATAAATCC AAGCATATTT ATCGCGATGT GTTGATAGCG
TCACTGCTGA TTAACTTGTT TGCCGTTGCA GCGCCGATGT TTTCACGGAT TGTGTACGAC
AAAGTCGTCC CCAATTTGGC TTTTGAAACC TTGTGGGTGC TCTCTAGCGG CATCTTAGTG
ATCTTTTTGT TCGATTTCGT ATTTAAAATG CTGCGCAGCT ACTTCATTGA TGTCGCAGGA
AAAAAATCGG ACATTCTGAT CTCTTCCAAA CTGTTTAGTA AAGTGATGGG CATCCGCATG
GAGGCTCGCC CACCTTCGGT TGGTGCTTTT GCTCGCCATT TGCAAGAGTT TGAATCGATT
CGTGAATTTT TTACATCCGC GACGATTTCT TCACTGATTG ATCTGCCATT CGCCCTGCTC
TTTTTAGTGT TGATCTGGTT AATGGCTGGA CATTTGGTGT GGGTGCCTGT GATCGGTGTC
CTGATTTTGG TGATTTACTC ATTTCTCATT CAAAGCCGCT TAAAACGGGC AATTGAAGAA
GGCTCAAGAC TCGCCTCACA AAAGTACGCC AACCTCATCG AAAGCTTAGC AGGACTAGAA
ACGGTGAAGC TGTTTGGCGC GCAAGGACAA TTCCAGTACC GCTGGGAAGA AGCCGTAGCG
CACATGGCGA ATTGGAACAT TAAAAGTCGC CGCATCACCG ATAGTATTCA AAACACCGCC
GGTTTTGTGC AGCAAGCAGC CAATATCGGC ATGATCATTG TCGGGGTCTA CCTGATTTCC
AACGGTGACC TGACCATGGG TGGACTGATT GCCGCAACGA TGCTCAGTGG CCGTGCGATT
GGCCCCTTAG TACAGCTCTC ACTGCTTTCA ACCCGTTACA ACCAAGCCAA ATCTTCTATG
ACTATCATTG AACAAGTGAT GTCGATGCCT GATGAACAGG AGGAAGGCAA ACGCTATATC
CATCGTCCCA TCATTCAAGG CAAGATTGAG CTGGACCGCG TGACTTTCCA TTATCCAAAT
TCACCTATCG CCTCCGTCCG TGATTTAAGT CTTACCATCC ATCCGGGTGA AAAAGTGGCG
ATTATTGGTA GAATTGGTTC GGGTAAAACC ACGCTTGAGC GCTTGATCAT GGGCCTGTAC
AAGCCAACTG AAGGGCATGT GCGAATTGAT GATACGGATA TCTCGCAGCT GCATCACATC
GATATTCGCC GCAATATTGG CTGTGTACCG CAAGACAGTG TGCTGTTTTA TGGCTCGATC
CGCGACAACA TTACGCTCGG TCGCCCACTT TCCGATGATC GTGAGGTAAT GGATGCGGCC
AACCGAGCGG GTGTTACGGT CTTTACTCAA CAAGATCCTG CGGGGCTAGA ACGTCAAGTG
GGTGAAGGGG GTATGCTGCT CTCGGGTGGT CAACGTCAAT CTGTGTCGAT TGCGCGCGCT
TTCCTTGGCC GCCCTCCCGT CTTACTGATG GATGAACCCA CCAGCGCGAT GGATAACCGC
TCAGAAATGC ACATTAAGCA ACAACTTAGC CAACTCAAGC CAAGTGAGAC GCTGATCCTT
ATCACCCACA AAACCTCGAT GCTGGATGTG GTTGATCGCG TTATTGTGAT GGAGAAAGGC
TGCATTATTG CCGATGGTCC AAAGCACGAA GTGCTGAACG ATCTGCGCCA AGGTAATGTA
CGCGCAGTGC AATAG
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| Protein sequence | MQDTLLNSLV YVSRYYGLAN SPEALINGLP LADGKLTPFL FPRSAERAGL IAKENRAPLD
QIPHLVFPVV LLLKGGEACV LNSINQETQE AEIVTAESGL VPVAYSLSDL EAMYIGRYFM
VKKQFRFDER SPEVLKPRDG HWFWSTIYKS KHIYRDVLIA SLLINLFAVA APMFSRIVYD
KVVPNLAFET LWVLSSGILV IFLFDFVFKM LRSYFIDVAG KKSDILISSK LFSKVMGIRM
EARPPSVGAF ARHLQEFESI REFFTSATIS SLIDLPFALL FLVLIWLMAG HLVWVPVIGV
LILVIYSFLI QSRLKRAIEE GSRLASQKYA NLIESLAGLE TVKLFGAQGQ FQYRWEEAVA
HMANWNIKSR RITDSIQNTA GFVQQAANIG MIIVGVYLIS NGDLTMGGLI AATMLSGRAI
GPLVQLSLLS TRYNQAKSSM TIIEQVMSMP DEQEEGKRYI HRPIIQGKIE LDRVTFHYPN
SPIASVRDLS LTIHPGEKVA IIGRIGSGKT TLERLIMGLY KPTEGHVRID DTDISQLHHI
DIRRNIGCVP QDSVLFYGSI RDNITLGRPL SDDREVMDAA NRAGVTVFTQ QDPAGLERQV
GEGGMLLSGG QRQSVSIARA FLGRPPVLLM DEPTSAMDNR SEMHIKQQLS QLKPSETLIL
ITHKTSMLDV VDRVIVMEKG CIIADGPKHE VLNDLRQGNV RAVQ
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