| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0132 |
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| Symbol | |
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| ID | 5134585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 155077 |
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| End bp | 156108 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640530455 |
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| Product | spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein |
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| Protein accession | YP_001214973 |
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| Protein GI | 147672269 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAACTT TCATTAAAGG ATTGGTACTT TCTGCAGTCG TTGCCTCTTC TCAGGTTTAT
GCAGAGCAAA CCCTAAACGT GTATGCGTGG GGTGGCTATC TGCCAGAGAA GTCGCTGAAA
GCTTTTGAAC AACAAGAAGG CGTTACTATT AACTATTCAA CCTTTGAGAA TAATGAGTCA
ATGTATACCA AACTCAAACT TCTGAAAGGC ACTGGTTACG ATGTCGTGTT TGCGTCCGCT
TATTTTATCG AAAAGATGGG CCGTGAAGGG CTACTGGCAG AAATCGATCA TAACCAAATC
CCGAACATGA AAGATGCAAT GCCAACCGTA TTAGGACTGG CGCACGATCC TCAAAACAAA
TTCTCACTCC CTTACATTTG GGGGATTACG GGTCTTTACT ACAACTCGTC TACCCTGCCT
AACGGAATCA CAAAATGGGC AGATCTGTGG GATAAGCAAT ACGAACAGCA AGTCATGCTG
ATTGACGATA TCCGCGACGT GTTTGGTATG GCTCTAAAGC TTAACGGCTT TAGCATCAAC
ACCAAAAATG AAGAGGAAAT CAAGAAAGCG TACGAATCTC TGGTGGCACT GAAGAAAAAC
GTATTGCTGT ATAACTCAGA TGCGCCACAC GTGCCTTACG TTTCTGGCGA AGCCACACTG
GGCATGCAGT GGAACGGCAA CGCTTACCAA GGCCAAGTGG AAATGCCTGA GCTGAAATTC
GTTATGCCAG AAGAAGGCGC GGTACTGTGG ATGGATAACT TCACCATTCC TTCAGGCAGC
AAGAACATTC CGTTGGCGCA CAAGTTTATT AACTTTATGT ACCAACCAGA AAACCAAGCT
GAGATTGTAC AAAGCTTAGG TTATGCCTCT GCCACCAAAG GCGGTCGAGC GCTGCTACCG
GCAGAACTGC GTGATAACCC GACTATCTTC CCATCGGATG AAGATATGAA AAAAAGCGAG
TTCATTAACG ATGTCGGCCC AGAAACGCTG GCGATTTATG AAAAGTACTG GCAGCGCCTA
AGAAACCAAT AA
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| Protein sequence | MKTFIKGLVL SAVVASSQVY AEQTLNVYAW GGYLPEKSLK AFEQQEGVTI NYSTFENNES
MYTKLKLLKG TGYDVVFASA YFIEKMGREG LLAEIDHNQI PNMKDAMPTV LGLAHDPQNK
FSLPYIWGIT GLYYNSSTLP NGITKWADLW DKQYEQQVML IDDIRDVFGM ALKLNGFSIN
TKNEEEIKKA YESLVALKKN VLLYNSDAPH VPYVSGEATL GMQWNGNAYQ GQVEMPELKF
VMPEEGAVLW MDNFTIPSGS KNIPLAHKFI NFMYQPENQA EIVQSLGYAS ATKGGRALLP
AELRDNPTIF PSDEDMKKSE FINDVGPETL AIYEKYWQRL RNQ
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