| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0123 |
|---|
| Symbol | garR |
|---|
| ID | 5134901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | - |
|---|
| Start bp | 146200 |
|---|
| End bp | 147147 |
|---|
| Gene Length | 948 bp |
|---|
| Protein Length | 315 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640530446 |
|---|
| Product | 2-hydroxy-3-oxopropionate reductase |
|---|
| Protein accession | YP_001214964 |
|---|
| Protein GI | 147671899 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 46 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGGATATC AGCATCCTAC CTTCAGCGCC AAGTCATTTG GGTATAAAAA CAAAAATCAT
AAGGAGAACA AGATGAGAGT CAGCTTTATT GGATTAGGCG TGATGGGGTA TCCCATGGCG
GGACATCTAC AAAAAGCCGG TTTTGACGTC ACGGTTTTTA ATCGTACTCA GGCGAAAGCG
GTGGCGTGGG CGAAACAGTT TGGCGGGCAG TATGCTGAAA CGGTAGCAGA ATGTGTCAAG
AACGCCGATG TGGTACTCAC TTGCGTAGGT AATGACGATG ATGTACGCAG CATGACCACG
GCAGCTACTG GCGCTATTCC CGCGATGAAA CCGGGCGCAG TATTGATCGA TCACACCACG
ACCTCAGCAC TGTTGGCTGA AGAGTTGTCG GCAGCGGCGC AGCAAGCGGG TTTGCATTTT
ATGGATGCTC CTGTTTCTGG TGGTCAGGCT GGCGCTGAAA ATGGCGTCTT GACCATTATG
TGTGGTGGCG ACGAAGCACT CTTTGCCAAG ATGCAACCTA TCTTTGCCGC TTACGGGCGC
TCTTCGGTTT TGATGGGTGC GGCAGGGCAG GGGCAGCGCG CTAAGATGGT CAATCAGATC
TGTATTGCCG GTGTGCTGAA TGGTCTGTCT GAAGGACTGA TGTTGGCAGA GCAAGCCGGT
TTGGATATCC CGAATCTGGT GGCGTGTTTG AAAAATGGGG CGGCTGGCTC TTGGCAGATG
GAAAATCGCG CGCTCACCAT GAGCCAAGAG AAGTTTGATT TTGGCTTTGC GATTGATTGG
ATGATCAAAG ATTTGGGTTT TTGCCTAGAT GAAGCCGCGC AGTTAGGCCT GAGATTACCG
ATGACAGAAA ACACGATGAC CGCTTACCAG CGCCTTTCTG CGCAGGGGTT AGGTCGTATG
GATACTTCCG TACTGATTCA AGCGGTAAAA GAAGCTGCTA AGAAATAA
|
|---|
| Protein sequence | MGYQHPTFSA KSFGYKNKNH KENKMRVSFI GLGVMGYPMA GHLQKAGFDV TVFNRTQAKA
VAWAKQFGGQ YAETVAECVK NADVVLTCVG NDDDVRSMTT AATGAIPAMK PGAVLIDHTT
TSALLAEELS AAAQQAGLHF MDAPVSGGQA GAENGVLTIM CGGDEALFAK MQPIFAAYGR
SSVLMGAAGQ GQRAKMVNQI CIAGVLNGLS EGLMLAEQAG LDIPNLVACL KNGAAGSWQM
ENRALTMSQE KFDFGFAIDW MIKDLGFCLD EAAQLGLRLP MTENTMTAYQ RLSAQGLGRM
DTSVLIQAVK EAAKK
|
|---|
| |