| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0117 |
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| Symbol | glgB |
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| ID | 5134337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | - |
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| Start bp | 133334 |
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| End bp | 135523 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640530440 |
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| Product | glycogen branching enzyme |
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| Protein accession | YP_001214958 |
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| Protein GI | 147671860 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR01515] alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGATCA CAAAAAAACC ATCCAAGGTT CAACAATTTT ATGATCAGTT GGCGCGTGCA
GCGTTTGCTG ATCCCTTTTC ATTTCTAGGC CCTTACATTC CCGCTGAACA AGGTGCGCTG
CGAGTGTGGA TGCCGGGGGC TGACAACGTC GCGTTGGTGG TTGAAGGGCA AGCTCGTGTG
GCGTTAGAGC GTGAAGGCGA GGGCGGCTTT GTGCTGAAAG ATGGCCGTAA TCTGCGTTTT
ACGCACTACC AATTGGCTGT CGATTGGGCG GGTACCGAGC AGTTACTCGA TGATCCGTAT
CAATATCACG GCCTCTACGC TGAATATGAA GATCTGCATA CGCCAAAGCA GATGTATCAC
CATATGGGGG CGCAGTTTGT CACCCTAGAG CGTGATGGAA AAATGGTCTC TGGCGTACGT
TTTCTGGTGT ATGCCCCTCA CGCGGCGGCG TGCAGTTTGA TTGGCGCGTT TAACCATTGG
GATGGTCGTC GCCATCCGAT GCAGCGTCTC GATTACGGTA TTTGGGGAAT TTTTATCCCC
GGCTTGCCGG AAGGCACGCA ATACAAATTT GAGCTGAAAG GCCCACATGG AGAAGGTCTG
CCGCATAAAG CGGATCCGTG GGGTTTTTAT GCTGAGCAAT ACCCTTCTTT TGCTTCTGTG
ACTTATGATC ACCGTCGTTA TCAGTGGCAA GATACGGCTT GGCAGCAGCG CCCTGTGACT
GAAAAGCGTA AACAAGCGCT CTCGTTTTAT GAGCTGCACG TTGGCTCATG GAAGCGAGGC
GAAAACGGTG AATTCCTCAA TTATCGTGAA TTGGCCGATC AATTGGTGCC TTATCTGGTT
GAGATGGGTT ATACCCATGT TGAGTTAATG CCTGTCGCTG AGCACCCATT TTATGGTTCT
TGGGGCTATC AACCGGTTGG TCTGTTTGCG CCCACTAGCC GTTACGGCTC GCCGGATGAT
TTCAAATATT TTGTCGATTT GTGCCACCAA GCGGGGATTG GTGTGGTGCT CGATTGGGTG
CCTGCGCACT TCCCGTCGGA TTCTCACGGT CTGGCCAATT TTGATGGCAC GCCCTTATTC
CATGATCCGG ATCCACGTCG CGGTTGGCAT CAAGACTGGA ACTCTTACAT CTACGATCTT
GGTCGCGAGC ATGTGCGCCG TTTCTTAGTC GCTAATGCGC TGTATTGGTT TGAGATGTTC
CATATCGATG GCATTCGCGT TGATGCGGTC GCATCGATGC TCTATCTCGA TTATTCGCGT
AGCCATGATC AATGGATCCC GAATGTTGAC GGTGGACGCG AAAACTACGA TGCGATTGCT
ACCTTCAAAT GGATGAACGA GGAGGTGTAC AAACACTTCC CGAATGCGAT GACGATTGCC
GAAGAGTCGA CTGCGTTTCC TGGCGTTTCT GCCCCGACCT TTATGGGCGG TCTCGGGTTT
GGTTTTAAGT GGAACATGGG CTGGATGCAC GATAGCTTAT CGTACATCAA AGAGGATCCG
GTGCATCGTA AATACCACCA CAATACCCTG ACTTTCCCGC TGATTTACGC GTTTAGTGAA
AACTATGTGC TCTCTTTATC ACACGATGAA GTGGTGTATG GTAAGCGCTC GCTTATGTAC
AAGATGCCGG GTGATGAGTG GCAGCAAACC GCCAACTTAC GCGCCTACTT GGGTTATATG
TATGGTCAGC CGGGCAAAAA ACTCAACTTT ATGGGTACCG AATTAGGACA GACTGCGGAG
TGGGATCACG ATGGTCAGTT GCAGTGGTTC TTAACGCAAT TTGAGCGCCA TGCGGGGATC
CAGCGTTTGG TGCGTGATTT GAACCATCTG TACCAAGCCC AAACCGCGTT GCATCAGCTT
GATTGCGATC CGCGTTGCTT CGAATGGCGC TTACAAGATA ATGCCGATCT CAGCGTGATC
GCCCATGAAC GGATGGATGA AGCTGGTAAT CGTGTGTTAG TGATCACCAA CTTCACGCCT
GTTCCACAGC AGGCATTTCG CTTAGGTGTT CCTAAAACAG GGAAGTACCG CTTGTTGCTC
AATACTGATG CCAAGCAGTA CAACGGCAGT GATTATCCGG TATTGCAGGA TGTGAGTACG
GAAGCGATCA GCAGTGAAGG TTTGGATCAA TCGCTGCTAT TGAGTGTGCC GCCGCTCGCG
ACGCTATTTT ATCAATGGAG TGCGAAGTAG
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| Protein sequence | MKITKKPSKV QQFYDQLARA AFADPFSFLG PYIPAEQGAL RVWMPGADNV ALVVEGQARV
ALEREGEGGF VLKDGRNLRF THYQLAVDWA GTEQLLDDPY QYHGLYAEYE DLHTPKQMYH
HMGAQFVTLE RDGKMVSGVR FLVYAPHAAA CSLIGAFNHW DGRRHPMQRL DYGIWGIFIP
GLPEGTQYKF ELKGPHGEGL PHKADPWGFY AEQYPSFASV TYDHRRYQWQ DTAWQQRPVT
EKRKQALSFY ELHVGSWKRG ENGEFLNYRE LADQLVPYLV EMGYTHVELM PVAEHPFYGS
WGYQPVGLFA PTSRYGSPDD FKYFVDLCHQ AGIGVVLDWV PAHFPSDSHG LANFDGTPLF
HDPDPRRGWH QDWNSYIYDL GREHVRRFLV ANALYWFEMF HIDGIRVDAV ASMLYLDYSR
SHDQWIPNVD GGRENYDAIA TFKWMNEEVY KHFPNAMTIA EESTAFPGVS APTFMGGLGF
GFKWNMGWMH DSLSYIKEDP VHRKYHHNTL TFPLIYAFSE NYVLSLSHDE VVYGKRSLMY
KMPGDEWQQT ANLRAYLGYM YGQPGKKLNF MGTELGQTAE WDHDGQLQWF LTQFERHAGI
QRLVRDLNHL YQAQTALHQL DCDPRCFEWR LQDNADLSVI AHERMDEAGN RVLVITNFTP
VPQQAFRLGV PKTGKYRLLL NTDAKQYNGS DYPVLQDVST EAISSEGLDQ SLLLSVPPLA
TLFYQWSAK
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