| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0088 |
|---|
| Symbol | |
|---|
| ID | 5134839 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 96666 |
|---|
| End bp | 97796 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640530411 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001214929 |
|---|
| Protein GI | 147672478 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0000928582 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAC TGCTGATCCT GACTTACACC GCCCTGTGTG TTGCAGTTTT TAAGGTTTTC
AAAATTCCAC TCAATAAGTG GACAGTGCCC ACCGCAGTGC TCGGCGGCGT GATACTGATT
GGAACCCTGA TCTTGCTGAT GAACTACAAC CACCCTTTTA CTCAGTTGGG AAGCCAAGTC
TATTCGACTA CTCCGATTGT GTCTGGAGTA CGAGGACGGG TGGTGGAAGT TCCTGTGAAA
CCAAACCAGC CACTGACACA AGGTGATGTT CTGTTCCGTA TTGATCCTAT CCCCTTCGAG
GCTGACGTTG CTCGCTTAAA AGCCAAAGTC AAAGAAGCGA GTCAAGGGGC CTTGGGGTTA
GAGTCTACTT TAAAAGAGGC GCAAGCGGCT GTACTCAAAG CCATCGCAGA GCGAGACAAA
GCGCAACGTG AATATGATCG TTATCAACGT GGTTATCAAC GTGGCGCATT TACTGAACAG
CAAATGGATA CCACTCGCCA AACTTACAAA GCCGCGCAAG CCGCCTTGGA GGTTGCACAG
TCAAAACAAG AGCAAGCCCA AATCGCTTTA GATTCGGAAG TCGGTGGTGA AAATACCACG
GTCGCTCAGC TCTTAGCGGA ACTGCGTAAA GCGGAATTCG ATTTGGAGCA AACCATCGTG
CGTGCCCCAA CGGATGGCTA TGTTACTCAG TTGGCTTTGC GTCCGGGCAT GATGTCTGTC
CCTTTGCCTC TGGCTCCTGT CATGACTTTT GTGCATACGG AAGAGAAAAT CTACACTGCG
GCTTTCCGCC AAAACTCTCT ACAACGTCTA CAACCGGGAT TTGCCGCTGA ATTTATGTTC
CGCGCACTGC CAGGTAAGGT ATTTAAAGGA GAGGTGATTG AAGTGCTACC CGCGATCGGA
GAAAGCCAAA TCCAAGCCCG TGGTGCTTTA CTTGGGACAG ACGCGCTCAG AACCTCTGGA
CGCGTTTTTG TAACGCTGCG CATTACTGAT GATTTATCGC AGTACCATCT GCCTATGGGT
TCCGCGGTTG AAGTCGCGGT GTACTCTGAC AGCTTTGAAC ATGTTTCTAT CATGCGAAAA
GTACTTATCC GCATGAAAAG TTGGCAGAAC TACCTCTACC TCGATCACTG A
|
|---|
| Protein sequence | MDLLLILTYT ALCVAVFKVF KIPLNKWTVP TAVLGGVILI GTLILLMNYN HPFTQLGSQV
YSTTPIVSGV RGRVVEVPVK PNQPLTQGDV LFRIDPIPFE ADVARLKAKV KEASQGALGL
ESTLKEAQAA VLKAIAERDK AQREYDRYQR GYQRGAFTEQ QMDTTRQTYK AAQAALEVAQ
SKQEQAQIAL DSEVGGENTT VAQLLAELRK AEFDLEQTIV RAPTDGYVTQ LALRPGMMSV
PLPLAPVMTF VHTEEKIYTA AFRQNSLQRL QPGFAAEFMF RALPGKVFKG EVIEVLPAIG
ESQIQARGAL LGTDALRTSG RVFVTLRITD DLSQYHLPMG SAVEVAVYSD SFEHVSIMRK
VLIRMKSWQN YLYLDH
|
|---|
| |