| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0086 |
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| Symbol | |
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| ID | 5134113 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 94562 |
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| End bp | 96142 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640530409 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001214927 |
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| Protein GI | 147672243 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.0685503 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAACCC TGCTCAATAA GATCAAAGAA GCGGGACTGG ATGCGGCCGC TGTCGCTGGT
GAAGAGGCGA TCATTTTCTG GAACCATGTC AGACAGCACG TGGCAACCAC CGCCCAAGAG
CGCGCACAAA GCTACATCAT CAGCGCCGAA TACCGCCGCG AAATGAAACA GTGGCAAACC
AGTATTGAAG AGCTGCGCGC TGCTCTTTCC CTATTAGAGT TACCCGCGGA TCTGGAATTA
ATGCTCTCGG TCAAACACAG TTTGAGTGAG CGTTTACTCG ACCATGGTGA ATATGTCGCG
GCACTGTCTG AATACGTGGC GATATCCAAC ATCGCCGTTG AGCATGGCAT GATTGATGAC
TACGTACTTG CGGTGCTCGG AATGGGCAAT TTATGTGATG CTTATGGCGA TCACAGCCGT
GCGTTACGCT ACTACCAAAA GATTGACAGC ATAGATCATG CGATTTCTAG CCGCTCACTG
CGCCTGCGTT ACAAACTGTA TATGCTGGCT TGCTACATCA GCCTTGGTCG TTATGCAGCG
GCCAATGATC TGATAAAAGA GTGTGATGAG TTGAGCATTC TGGTCAGCGA TAAACTGCTG
ACTGGGCAGA TCATGCTCTA TCAAGCCAAG CTTTATCTGC AACAAGGCAA AGTGCAAAAG
GCGATGATGA CACTCGCCAA TGCACAGTAT TCGTCATCGC TGACACCATC GGATTGGCTA
TCAAGCATGC TACGCATCGA GTTAGCGCAT TGCCTCTCTA AAGCAGGTAA GGCACATTTT
GCGACCATGC TGCTGAGTAG CACCGAAAAG CGCTTACAAA ACATTCATTC CCCTTTCCTT
GAAAAACGCC TCTATGAAGC GTTCAGCGAA GTGTGTGAAC TTGAAGGAAT GTACAAAACC
GCACTGGTTT ACGAAAAGAA AGCATTTCGC ATCGAAAGCG ATTTAATGAA GCAGATCCCC
ATCAGTGAAT TAGGCCCAAT TCAGCTGCGC CGCCTGTCGC GCTTTGAGCT GCAACTTAAA
CTGATTTTGT CGGAATTAGA AAATCGTGAG CTTAAAGAAA CCACCGAAAG CCAAAAGAAT
ACGGTGTTGC AACTACAGCA AGATGTGTTC ACCGATCCAC TGACAAAACT GCATAACCGC
CGTTGGTTGG ACGTGAAGCT GAAAGATCTG CTGCTGCACG AAACCCCGTT TGCTTTCTTA
GTCGTTGATA TTGACCACTT TAAATCGATC AATGATGAAT TGAGTCATTT GGTAGGGGAT
AAAGCGATTG TCAATGTATC CAGTGAACTG GCGAGTTACT TTAAATTCCG TGGTGCCTCC
TGCGTACGTT TCGGTGGCGA GGAATTTCTG GTGATTTTGG AAAACGTCAC CAGTGATATG
GCACAAATGC ATGCCGAAAC CTATCGCCAA CGTATTTTTG ATTTCCCATG GCAAGACGTA
CTTGGCGAAC GGGGACTGAC GGTCAGTATC GGTATCACCT TGCATCGCGA GGGGGAAAAT
ACCCAACGTA CGTTCTACCG CGCTGACAAA GCTTTGTATC GCGCCAAAGC CAATGGCCGT
AACCAAGTGT GTGTTGAGTA G
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| Protein sequence | METLLNKIKE AGLDAAAVAG EEAIIFWNHV RQHVATTAQE RAQSYIISAE YRREMKQWQT
SIEELRAALS LLELPADLEL MLSVKHSLSE RLLDHGEYVA ALSEYVAISN IAVEHGMIDD
YVLAVLGMGN LCDAYGDHSR ALRYYQKIDS IDHAISSRSL RLRYKLYMLA CYISLGRYAA
ANDLIKECDE LSILVSDKLL TGQIMLYQAK LYLQQGKVQK AMMTLANAQY SSSLTPSDWL
SSMLRIELAH CLSKAGKAHF ATMLLSSTEK RLQNIHSPFL EKRLYEAFSE VCELEGMYKT
ALVYEKKAFR IESDLMKQIP ISELGPIQLR RLSRFELQLK LILSELENRE LKETTESQKN
TVLQLQQDVF TDPLTKLHNR RWLDVKLKDL LLHETPFAFL VVDIDHFKSI NDELSHLVGD
KAIVNVSSEL ASYFKFRGAS CVRFGGEEFL VILENVTSDM AQMHAETYRQ RIFDFPWQDV
LGERGLTVSI GITLHREGEN TQRTFYRADK ALYRAKANGR NQVCVE
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