| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0065 |
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| Symbol | |
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| ID | 5134245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009456 |
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| Strand | + |
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| Start bp | 68638 |
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| End bp | 69738 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640530388 |
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| Product | GGDEF family protein |
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| Protein accession | YP_001214906 |
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| Protein GI | 147672035 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.00648256 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATACAC AAACTCAGAA AACGCTCCAC CCGCTGATCT TACATGCCAA AACACTGCTG
ATCTTCATGT CGGCGATTCT GATTTTGGCC AATTTGTATT TGATCAACAG TACTCGCGAT
TTATCTAAGT CTTACTCTTC GCATACTAAC CAAGCGATCT GGTTCTTATT CCAGCTCAAT
AAAGAGTTTA CTGAGATGCT GGCGCTCTCC CCCTACCTAT TGGAGTCGGA GATCAACCAG
CGCGATGTGA TGGTGAAATA TGAGCTGACT TGGAGCCGTT TTGATCTGAT CCTCAATAGC
CCAGAAGCCG ACGGCATTAT AGGCATGCCC AGCACTCGCG AATTCTTCCA AGCCGCGTTT
GCGCGCTTTA AACAACTTGA ACCGCTACTG CTTGCGGCCA AAAATCCAGA AAGCTTACAA
ACTTTTATTG TTGCCGCCCA ACAAGAGCTG GAGATTTTTA TTCAGTTCAT AAACCGCACA
TTTGGAATGC AAAGTCCTTT GTATGTAGAG CAAAAAGAGA AACTGAATTA CCTCAGTCGC
ATCCAGTTTG CGTTAATTTT GTTGACGTTT AGCTGTGTGG GACTGGTGAG TTTTATTTTG
CATAAAGAGG CCACGCACCA TAGAGTCTTG GCCTTAACGG ACCCATTAAC AGGGCTGGAA
AACCGTACAG CCATGTTCGC CGAATTAGAA CGCCACCGCC GCAGCGGTGG ATTCTCTCTC
TTTTTGCTCG ATCTGAATGG TTTTAAACAA ATTAATGATA CCTACGGACA TCCAATGGGC
GATGCGGTAC TCAAACAGGT TGCTTATCGC TTAAACAACT CGATTCCTTC ATTCGATTAT
CGTGTATTTC GGATGGGGGG AGATGAATTT GCCATCATCC TAAGCAGCAT CAATTCGACC
GAGCAGATGA TGATGCAGCG CATGATCAAA CAGTGTTTCG ACCATGAATT TGAATTAAGT
GGCGATTTAC GAGCCAAACT CAACACCAGC GTCGGGGTCA GTACTTATCC ACTCGACAGC
ACCAATTTGA GCCAGTTGAT CCATCTGGCA GATAAAAACA TGTATGAAAT GAAATTCCTA
CAAAAAAGCC CCTCATCGTG A
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| Protein sequence | MNTQTQKTLH PLILHAKTLL IFMSAILILA NLYLINSTRD LSKSYSSHTN QAIWFLFQLN
KEFTEMLALS PYLLESEINQ RDVMVKYELT WSRFDLILNS PEADGIIGMP STREFFQAAF
ARFKQLEPLL LAAKNPESLQ TFIVAAQQEL EIFIQFINRT FGMQSPLYVE QKEKLNYLSR
IQFALILLTF SCVGLVSFIL HKEATHHRVL ALTDPLTGLE NRTAMFAELE RHRRSGGFSL
FLLDLNGFKQ INDTYGHPMG DAVLKQVAYR LNNSIPSFDY RVFRMGGDEF AIILSSINST
EQMMMQRMIK QCFDHEFELS GDLRAKLNTS VGVSTYPLDS TNLSQLIHLA DKNMYEMKFL
QKSPSS
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