| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_0035 |
|---|
| Symbol | rluA-2 |
|---|
| ID | 5134879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009456 |
|---|
| Strand | + |
|---|
| Start bp | 39332 |
|---|
| End bp | 39997 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640530358 |
|---|
| Product | ribosomal large subunit pseudouridine synthase A |
|---|
| Protein accession | YP_001214876 |
|---|
| Protein GI | 147672092 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 45 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTGG AAGATAATCC ACTGCTCAGC AATCCGGCGC AAGGTCAAGA CATCACCATT
GTGTATCAAG ATGACGCCAT CGTAGTGGTC AATAAGCCTG CTGAATTTCT CTCTGTCCCC
GGTGTGCATG TGCATGATTC TGTGTTGACG CGCTTAAAGG CTCAATTTAC CCAAGCAGAA
GGGGTATTTG CCCTACATCG TCTCGATATG TCTACTTCTG GACTTTTGGT GTTTGCGCTG
ACGCGACGTG CTAACAAACA GTTGCAAAAG CAGTTTATTT CTCGTGCCGT CCAAAAGCGC
TATGTCGCAC TTATCGAAGG AAAATTAAGC GAAACACAAG GTGAGATCCA GTTGCCTTTG
TGTGGCGATC TGGATGATAG ACCAAGACAA AAAGTGTGCT GGCAGCAAGG TAAGCCTGCA
CTCACTCATT GGGAAACCGT GCAAGTGGAG CAAAACCGAA CTCGTGTTTA CCTCTACCCA
CATACAGGAC GTACCCATCA ATTGCGAGTA CATTGCGCCC ATCATCTTGG CTTAAATGCG
CCGATTGTCG GTGACGATTT GTATGGCTTG CAAGACAAAC GTTTGTTTTT GCATGCCGAA
CAACTGAGTT TTGCTCATCC CTACACTAAG CAGCCCATGA CTTTCCAAGT CGATGCGGAT
TTTTAA
|
|---|
| Protein sequence | MPLEDNPLLS NPAQGQDITI VYQDDAIVVV NKPAEFLSVP GVHVHDSVLT RLKAQFTQAE
GVFALHRLDM STSGLLVFAL TRRANKQLQK QFISRAVQKR YVALIEGKLS ETQGEIQLPL
CGDLDDRPRQ KVCWQQGKPA LTHWETVQVE QNRTRVYLYP HTGRTHQLRV HCAHHLGLNA
PIVGDDLYGL QDKRLFLHAE QLSFAHPYTK QPMTFQVDAD F
|
|---|
| |