Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_0020 |
Symbol | |
ID | 5134531 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009456 |
Strand | - |
Start bp | 22315 |
End bp | 23907 |
Gene Length | 1593 bp |
Protein Length | 530 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640530343 |
Product | sigma-54 dependent transcriptional regulator |
Protein accession | YP_001214861 |
Protein GI | 147671674 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCAAT GGCTGGCGTT TGCAACCCAA TTGGTGGGAG TAAGGAAGTC CCACCAGCTT GCGCTGCAAT TTGTTGATCT GCTGACTCAA GGCTTAGATC TGAGTGATAG CCTTTTGTTG TTGCCATCGT CGGATGGGCG TTTACTTGTG CCTCATGATC CACAGCGTCA GTTCGCGTGG TCAGTGACGG ATTTTGATGT GCCTTTTGCC CATGTTTTGC AGTCATCCAA TGCGATGCAT TTGACCGCGG AAGAGTTGGT ATTTTGGCAA TCCAATCGCA CTTTTAGCCA GTTAACCTCT CGCGTGGGGA TGTTTGATTC GGTATGGATC CAACCCCTGC CGATGGATAC TCGTCAAGTA CACTCGATCT TGCTGTTGAT GGGCGAGAGT CACGGTATCG TGAGCGCTTT TGAAAACGCG GACTTTTTGA AGTTTATCGA GGTTTTTTCC CAGCAATGGT CACTGCTCAA CGATATGGAA CGTGAAGAGC AGCGCCGCTT GGAGCTGAAA CAATCGCTGA CGGATATTGA ACGCGACTCG GCGCAGCGCT CACTGGCCAA TGCGTTATCG CGTACTTTGA TTGGTGAAAG CGCTGCGATG CAAAAGCTGC GTGAGCAGAT TGTCTCTGCC GCTAACTCTC AGCTCTCGGT CATGGTGCAA GGTGAAACTG GCACGGGGAA AGAGTTAGTC GCCGCGGCCG TGCATGAACT TTCGTCACGT AAGTCTGCGC CGTTTGTTGC GATCAACTGT GCGGCGATCC CTGAGCATCT ACTGGAAAGT GAACTGTTTG GTTACTGCAA AGGGGCATTT TCTGGAGCGG ACAGCGATAA ACAGGGACTT ATCGCACAAG CGAATGGTGG CACGCTATTT CTGGATGAGA TCGGCGATAT GCCGCTCACC TTACAAGCCA AATTATTGCG TGTGCTTGAA TCGCGTACTT TTCGACCGCT CGGTGGTAAG CAGGAGCTCA GTTCCGATTT CCGTCTGGTA TCTGCCACAC ACGTCAATCT GCTGGATCAA GTACGCAAAA AAGAATTTCG CCAAGATCTC TATTACCGTC TATTCCAGTA TCCGATCACC TTGCCGCGTT TGGCGGCACG CTTGGAAGAT ATTGAGCTGC TCAGTGAGCA CTTTGTGCGC GTGTTCAACT TGCAACATAA CACGCGCATT CGTGGTTTGA ACTATCGAGC CATCGACTGC CTTAAGCAGT ACGACTTCCC GGGAAATGTG CGTGAGCTGA AACATTTGAT TGAGTTTGGC TGCGCGCAAA CAGCGGATGG TACGCAGGTG GAAGCTAGTT GCTTTGCCCA TCGTTTACAA ACCCTACCCT GTCTTGCGCC TGAAGCGACG CCGGTAGCCG TTTCTGTCGA AACTGAGAAC GTGGATCTTG AACCCTCGGT TGCGCTGGCT GGAGAACCGA ATTTTGCGGT TATCCATGAT TTGAAACAGG CGGTCAGTCA GTTTGAAGCG TTGATCATCA GTGAGCGTTT GAACCGCTTT GCTGGCGATC GCGCGAAAGC GGCGAAAAGT CTCGGTATCC CTAAGCGTAC CTTGGCCTAC AAGTGCCTGA AATTGGAGAT CAAAACCCCA TGA
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Protein sequence | MSQWLAFATQ LVGVRKSHQL ALQFVDLLTQ GLDLSDSLLL LPSSDGRLLV PHDPQRQFAW SVTDFDVPFA HVLQSSNAMH LTAEELVFWQ SNRTFSQLTS RVGMFDSVWI QPLPMDTRQV HSILLLMGES HGIVSAFENA DFLKFIEVFS QQWSLLNDME REEQRRLELK QSLTDIERDS AQRSLANALS RTLIGESAAM QKLREQIVSA ANSQLSVMVQ GETGTGKELV AAAVHELSSR KSAPFVAINC AAIPEHLLES ELFGYCKGAF SGADSDKQGL IAQANGGTLF LDEIGDMPLT LQAKLLRVLE SRTFRPLGGK QELSSDFRLV SATHVNLLDQ VRKKEFRQDL YYRLFQYPIT LPRLAARLED IELLSEHFVR VFNLQHNTRI RGLNYRAIDC LKQYDFPGNV RELKHLIEFG CAQTADGTQV EASCFAHRLQ TLPCLAPEAT PVAVSVETEN VDLEPSVALA GEPNFAVIHD LKQAVSQFEA LIISERLNRF AGDRAKAAKS LGIPKRTLAY KCLKLEIKTP
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