Gene VC0395_0020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_0020 
Symbol 
ID5134531 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009456 
Strand
Start bp22315 
End bp23907 
Gene Length1593 bp 
Protein Length530 aa 
Translation table11 
GC content51% 
IMG OID640530343 
Productsigma-54 dependent transcriptional regulator 
Protein accessionYP_001214861 
Protein GI147671674 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCAAT GGCTGGCGTT TGCAACCCAA TTGGTGGGAG TAAGGAAGTC CCACCAGCTT 
GCGCTGCAAT TTGTTGATCT GCTGACTCAA GGCTTAGATC TGAGTGATAG CCTTTTGTTG
TTGCCATCGT CGGATGGGCG TTTACTTGTG CCTCATGATC CACAGCGTCA GTTCGCGTGG
TCAGTGACGG ATTTTGATGT GCCTTTTGCC CATGTTTTGC AGTCATCCAA TGCGATGCAT
TTGACCGCGG AAGAGTTGGT ATTTTGGCAA TCCAATCGCA CTTTTAGCCA GTTAACCTCT
CGCGTGGGGA TGTTTGATTC GGTATGGATC CAACCCCTGC CGATGGATAC TCGTCAAGTA
CACTCGATCT TGCTGTTGAT GGGCGAGAGT CACGGTATCG TGAGCGCTTT TGAAAACGCG
GACTTTTTGA AGTTTATCGA GGTTTTTTCC CAGCAATGGT CACTGCTCAA CGATATGGAA
CGTGAAGAGC AGCGCCGCTT GGAGCTGAAA CAATCGCTGA CGGATATTGA ACGCGACTCG
GCGCAGCGCT CACTGGCCAA TGCGTTATCG CGTACTTTGA TTGGTGAAAG CGCTGCGATG
CAAAAGCTGC GTGAGCAGAT TGTCTCTGCC GCTAACTCTC AGCTCTCGGT CATGGTGCAA
GGTGAAACTG GCACGGGGAA AGAGTTAGTC GCCGCGGCCG TGCATGAACT TTCGTCACGT
AAGTCTGCGC CGTTTGTTGC GATCAACTGT GCGGCGATCC CTGAGCATCT ACTGGAAAGT
GAACTGTTTG GTTACTGCAA AGGGGCATTT TCTGGAGCGG ACAGCGATAA ACAGGGACTT
ATCGCACAAG CGAATGGTGG CACGCTATTT CTGGATGAGA TCGGCGATAT GCCGCTCACC
TTACAAGCCA AATTATTGCG TGTGCTTGAA TCGCGTACTT TTCGACCGCT CGGTGGTAAG
CAGGAGCTCA GTTCCGATTT CCGTCTGGTA TCTGCCACAC ACGTCAATCT GCTGGATCAA
GTACGCAAAA AAGAATTTCG CCAAGATCTC TATTACCGTC TATTCCAGTA TCCGATCACC
TTGCCGCGTT TGGCGGCACG CTTGGAAGAT ATTGAGCTGC TCAGTGAGCA CTTTGTGCGC
GTGTTCAACT TGCAACATAA CACGCGCATT CGTGGTTTGA ACTATCGAGC CATCGACTGC
CTTAAGCAGT ACGACTTCCC GGGAAATGTG CGTGAGCTGA AACATTTGAT TGAGTTTGGC
TGCGCGCAAA CAGCGGATGG TACGCAGGTG GAAGCTAGTT GCTTTGCCCA TCGTTTACAA
ACCCTACCCT GTCTTGCGCC TGAAGCGACG CCGGTAGCCG TTTCTGTCGA AACTGAGAAC
GTGGATCTTG AACCCTCGGT TGCGCTGGCT GGAGAACCGA ATTTTGCGGT TATCCATGAT
TTGAAACAGG CGGTCAGTCA GTTTGAAGCG TTGATCATCA GTGAGCGTTT GAACCGCTTT
GCTGGCGATC GCGCGAAAGC GGCGAAAAGT CTCGGTATCC CTAAGCGTAC CTTGGCCTAC
AAGTGCCTGA AATTGGAGAT CAAAACCCCA TGA
 
Protein sequence
MSQWLAFATQ LVGVRKSHQL ALQFVDLLTQ GLDLSDSLLL LPSSDGRLLV PHDPQRQFAW 
SVTDFDVPFA HVLQSSNAMH LTAEELVFWQ SNRTFSQLTS RVGMFDSVWI QPLPMDTRQV
HSILLLMGES HGIVSAFENA DFLKFIEVFS QQWSLLNDME REEQRRLELK QSLTDIERDS
AQRSLANALS RTLIGESAAM QKLREQIVSA ANSQLSVMVQ GETGTGKELV AAAVHELSSR
KSAPFVAINC AAIPEHLLES ELFGYCKGAF SGADSDKQGL IAQANGGTLF LDEIGDMPLT
LQAKLLRVLE SRTFRPLGGK QELSSDFRLV SATHVNLLDQ VRKKEFRQDL YYRLFQYPIT
LPRLAARLED IELLSEHFVR VFNLQHNTRI RGLNYRAIDC LKQYDFPGNV RELKHLIEFG
CAQTADGTQV EASCFAHRLQ TLPCLAPEAT PVAVSVETEN VDLEPSVALA GEPNFAVIHD
LKQAVSQFEA LIISERLNRF AGDRAKAAKS LGIPKRTLAY KCLKLEIKTP