Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DehaBAV1_1324 |
Symbol | |
ID | 5132282 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. BAV1 |
Kingdom | Bacteria |
Replicon accession | NC_009455 |
Strand | - |
Start bp | 1288888 |
End bp | 1290264 |
Gene Length | 1377 bp |
Protein Length | 458 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640530258 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_001214779 |
Protein GI | 147669961 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00452452 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGATAG AATTTACGTT TGATAGTCTG GTTATGGCGG CTATTGTAGC AGCTATTGCC CTTGTCCTGT TTTTTTTGGT GAACAAATTG TTTTCCAGAT ATATCCGGAA AGATGAAGAA GGGAAAAAAG TAAGTTTACT TAGGAAGGCA CTCAAAGCAG TCCGTTTACC GGTTTTGCTG GTTATTTGGT GCATTGCTTT GTATATCATA TTTGAAAATC TGACTATTCA AGTTGATCTT AGCAAACAGA TTTCTAAAGC CCTTGAATTA CTTATGGCAG CCCTGACGCT TTGGATTGGG GCCGGGCTGA TAGAAGGGTT GCTTAGCTGG CTTAAAACAG AAATACCCGG CAAAGCCAAT TCACAGGTAA ATGACCATAT TATAGACAGC CTTCGTTTTG TAGTGCCATT GTTGGCAGTA CTGACTCTGG TAGTTGCGGG TATAGGAATA TACGGGGTGG CAGCAGACGG GCTGACCGTT TGGCTGGGTA CCCACGGAGT CAAACTGTTA CTTATCATAG GTTTGATTAT TGCCGGTGTT TATGCTGTCA GCCGGGGCGT ACCGGCGCTT ATCCGTGGAA TTATATATGG CGGGGTTGCC AAACCCAAAG AAGAAGCTAA AAAACGGGCG GATACCCTTA TCGGGGTGGC TGTATCTACT GCAGAGGTAG TGGTAGTGGC TATGGGGGCT TTTGTGGCCC TGTCTGAGGT GGGGTTGGAT ATCGGGCCTA TACTGGCCGG TGTCGGTGTT TTGGGTGTGG CTATCGGCTT TGGTGCCCAG AGTTTGGTTA AGGATTACCT TTCAGGTTTG TTTATAATAC TGGAAAACCA GTATTCGGTG GGAGACGTTA TCAAGGTAAT GGATGTAGTG GGTGAGGTGG AATTTATAGA CCTTCGCCGT ACCATTGTGC GTGATCTGGA CGGGGTGGTG CACGTAGTTT CCAACGGTGA AATACGGATA ACCAGCAACT ACACCAAGTA TCTTTCACGG GTTAATTTTG ATATCAGTAT CGGCTATCAG GAAGATATAA ACCATGCCAT AGATGTTATA AACAAGGTGT GTGCCGAATT TACCAGTGAA CCCGAATGGA ATAAATCCGT AGTCAAAAAT TCACTGGGAG TACTCAGAGT GAACAAACTG GGTGACTCTG GGGTGGATAT AAAAGTGTTG GGTGACGTCA AGCCGGGTAC TCAGTGGGCT ATAAAAGGAG AGCTTCGCAA GCGGATAAAG ATTGCCTTTG ATCGTGAACA TATTGAAATA CCCTGGCCGC ATACCAAGGT CTTCTTTGGC AATGCTTTGC CGGGTTCGAA GATGCAAATT GCTAAAGTGT CGGGCGAAGA ACTTCCGGAA GCTGAATCTG AACCGGAGTC AGAGTAG
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Protein sequence | MLIEFTFDSL VMAAIVAAIA LVLFFLVNKL FSRYIRKDEE GKKVSLLRKA LKAVRLPVLL VIWCIALYII FENLTIQVDL SKQISKALEL LMAALTLWIG AGLIEGLLSW LKTEIPGKAN SQVNDHIIDS LRFVVPLLAV LTLVVAGIGI YGVAADGLTV WLGTHGVKLL LIIGLIIAGV YAVSRGVPAL IRGIIYGGVA KPKEEAKKRA DTLIGVAVST AEVVVVAMGA FVALSEVGLD IGPILAGVGV LGVAIGFGAQ SLVKDYLSGL FIILENQYSV GDVIKVMDVV GEVEFIDLRR TIVRDLDGVV HVVSNGEIRI TSNYTKYLSR VNFDISIGYQ EDINHAIDVI NKVCAEFTSE PEWNKSVVKN SLGVLRVNKL GDSGVDIKVL GDVKPGTQWA IKGELRKRIK IAFDREHIEI PWPHTKVFFG NALPGSKMQI AKVSGEELPE AESEPESE
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