| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1289 |
|---|
| Symbol | |
|---|
| ID | 5132198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 1260309 |
|---|
| End bp | 1261085 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640530223 |
|---|
| Product | helix-turn-helix, type 11 domain-containing protein |
|---|
| Protein accession | YP_001214746 |
|---|
| Protein GI | 147669928 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1497] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTAGAGA TACTTCGAAA CAAGAGTTTT GCCACCCGTT TCCAGATACT TATTGAGATA
GCTACTCACG GGCCTACTAT TCAGCAGAGG GCTATAGCCC AAGAGCTGTC TATCACCCCG
CAGGCCGTTT CAGACTATAT AAGCCAGCTG GAAGGCGAAA GCATGATTAC CTATTTGGGG
CGTTCACGCT ACCAGATAAC CCGCGAAGGG GTAAACTGGG TGCTTAAGAA TGTCCGGGAG
GTAAAGGCCT ATTTTGACGG GATAGACAGT GTCATAAACG GGATAGTGAT ATCACCCGCT
ATTGCCGAAA AGGATATAAA ACAGGGCGAA CAGGTAGGCC TGAAAATGGT GAATGGTCTG
TTGTATGCCA CTGCTGATTG CCAGACCAAG TCCACCGGGA TTGCCGAAGC TGATGCCAAA
GCCGGCGAAG ATGTGGGCGT ACGTGATATA CAGGGGCTGA TTGAATTCAG CTACGGGCTG
GTGGCAGTGC TGGTTGTGCC GGGTATTGCC AAAGGCGGTT CGCGGCATAT TGATTTGGAG
CTTTTGAAAA CCAGACTCAA AGGGGTTAGT CATGTAGGGG CAATCGGGCT TGAATCTGTG
GCGGCACTGC ACCGGGCCGG AATAGAACCC GATTACCTTT ATGATGTTTC CGGAGTAGTT
ATAGATGCCG CTTTGCACGG GCTGTCTTCG GCGGTGGTTT GTACCGAAGA AGATGTATAC
GCTTTGGTAT CCAGCCTTAA AGACCGCAAT ATTGAATACT CGCTGACCAG TCTCTAG
|
|---|
| Protein sequence | MVEILRNKSF ATRFQILIEI ATHGPTIQQR AIAQELSITP QAVSDYISQL EGESMITYLG
RSRYQITREG VNWVLKNVRE VKAYFDGIDS VINGIVISPA IAEKDIKQGE QVGLKMVNGL
LYATADCQTK STGIAEADAK AGEDVGVRDI QGLIEFSYGL VAVLVVPGIA KGGSRHIDLE
LLKTRLKGVS HVGAIGLESV AALHRAGIEP DYLYDVSGVV IDAALHGLSS AVVCTEEDVY
ALVSSLKDRN IEYSLTSL
|
|---|
| |