| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1260 |
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| Symbol | |
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| ID | 5131551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | + |
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| Start bp | 1235005 |
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| End bp | 1235544 |
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| Gene Length | 540 bp |
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| Protein Length | 179 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640530191 |
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| Product | SSU ribosomal protein S30P / sigma 54 modulation protein |
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| Protein accession | YP_001214717 |
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| Protein GI | 147669899 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1544] Ribosome-associated protein Y (PSrp-1) |
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| TIGRFAM ID | [TIGR00741] ribosomal subunit interface protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00134888 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGATTC AGATTACCAC CAAGAATTGC CGCCTGGACA ACCGTACCCG CAGTTATATC
CAACGCAAAA TGGGACGGAT AACCCGCATG CTCCCCCAGA TTTCCGAGTT CAAGATTGAG
CTTGACGAGG AACAAACCCG TTCCCAGGCT GACCATTTTA TCCTTAAAGC TACTCTGCAT
ACCGGTACAG ACGTACTTTA CGCTGAAGAA CGAGCCGAAA ACCTGCTGAC CGCCGCCGAC
CAGGCGGTGA AAGTGCTTAA CCAGCAGATT GACCATGCCA AAGGCAAAAT GGAAGAAAAA
GTACGCAACC GCGAAAGCAT ACGTCTCAGC CAGCCAAAGG TGTCTTCTCC TCCACGTGAG
CCTTTAATCC GAAAACGCCA ACAAGAGGCA AAACCCATGA CAGTGGAAGA AGCCGTAAAT
CAGCTGAATT TATCCGGAGA GGAATATCTG CTCTTTTTAG GTCCGGATAC CAAACGGGTA
AATCTGCTTC GCCGCTTTGC TGACGGCAAA TTTGAGCTGG TAGAGCCTGT ACCCGAATAG
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| Protein sequence | MEIQITTKNC RLDNRTRSYI QRKMGRITRM LPQISEFKIE LDEEQTRSQA DHFILKATLH
TGTDVLYAEE RAENLLTAAD QAVKVLNQQI DHAKGKMEEK VRNRESIRLS QPKVSSPPRE
PLIRKRQQEA KPMTVEEAVN QLNLSGEEYL LFLGPDTKRV NLLRRFADGK FELVEPVPE
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