Gene DehaBAV1_1257 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDehaBAV1_1257 
Symbol 
ID5131619 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDehalococcoides sp. BAV1 
KingdomBacteria 
Replicon accessionNC_009455 
Strand+ 
Start bp1233394 
End bp1233975 
Gene Length582 bp 
Protein Length193 aa 
Translation table11 
GC content50% 
IMG OID640530188 
Product2'-5' RNA ligase 
Protein accessionYP_001214714 
Protein GI147669896 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.000034969 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGCTGAAG GACTTATCCG CACTTTCATC GCCATAGAAC TGTCACCTGA GCTTAAAACC 
ACACTCGGCG GTATCCAGAA TTCGCTGCCT ATACCCTCTC AAGCTATTAA ATGGGTAAAA 
CCCGAGTCTA TCCACCTGAC TCTCAAATTT CTGGGGGATA CCCCGCTAAG CCAGATTGAG 
AGTATCGTAC AGGGCATGGA GAAAGCCGCA CTGGCCTGCC CTGCCTTTAC CCTATCAACC 
ACCCGAATAG GGGCTTTCCC TTCACTTTCA AACCCGAAGG TTATCTGGCT GGGGCTGGAA 
GGTGAGACCG ATAAACTGCA AACCACCTTC GCCGAAGTTG AGAAAAATAT TTCCCGGCTG 
GGATTTCCAA CAGATACACG GGAATTTGCT CCTCACTTGA CCCTTGGGCG TCTTAGGGAG 
AATGCCGGTA GAAATGATAT AGAAACCACT GCCAAAATAC TCAAATCCGC ACCCCCTATC 
CCCCAAACCA GCTTACACGC CAGCCATATC TGTTTGTTTA AAAGCCAGCT TTTACCCGCC 
GGACCGTTAT ATACCAGACT GGCCCAAATC AGCCTTGCCT AG
 
Protein sequence
MAEGLIRTFI AIELSPELKT TLGGIQNSLP IPSQAIKWVK PESIHLTLKF LGDTPLSQIE 
SIVQGMEKAA LACPAFTLST TRIGAFPSLS NPKVIWLGLE GETDKLQTTF AEVEKNISRL 
GFPTDTREFA PHLTLGRLRE NAGRNDIETT AKILKSAPPI PQTSLHASHI CLFKSQLLPA 
GPLYTRLAQI SLA