| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1236 |
|---|
| Symbol | groEL |
|---|
| ID | 5132024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 1216232 |
|---|
| End bp | 1217845 |
|---|
| Gene Length | 1614 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640530162 |
|---|
| Product | chaperonin GroEL |
|---|
| Protein accession | YP_001214693 |
|---|
| Protein GI | 147669875 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02348] chaperonin GroL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000227915 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGC AGATTATATT TGGCGAAAAA GTCAGGGTCT CCCTTAAAAA GGGTGTTGAC
ACTCTGGCAA ATACAGTAAG AGTAACCCTT GGCCCTAAAG GTCATCCCGT AGCCCTTGAG
CGGAAATGGG GCGCACCTAC TGTTATAGAT GACGGTGTAA CCATTGCCCG TGATATTGAA
CTGCCCGATG CTTTCGAAAA TATGGGCGCC CAGCTGGTCA AAGAGGCCGC TACCCGCACC
AGCGATGCCG CCGGTGATGG TACCACCACC TCTATCGTAC TGGCTCAGGC CCTTATCAAT
GAAGCCTTCA AGAATATTGC CGCCGGTGCC GAACCCATCA ACCTGAAACG CGGTATTGAA
AAGGCTGTTG CCGCCCTAAA GGCCCAGCTC CGCAAGAATT CCACCCCCGT CAAGGGCAAA
CAGCAGATTG TTCAGGTTGC TACCATTACC GGTAAAGACC CCGAAATCGG TAACCTGATT
GCTGACGTTA TGGACAAAGT CGGCAAAGAC GGCGTTATCA CTATTGAAGA ATCCCGTGGC
CTGCGTTATG AAACCAGCTA TGTAGAAGGT ATGCAGTTTG ACCGCGGTTA TATCAGTGCC
TACTTCGTAA CTGACCCCGG CCGCATGGAA TCCGTTATGG AAGATGCCAC CATTCTTATG
ACTGACCGCA AGATTGAAAC CGTTGCCGAG CTTCTGCCCG CTCTGGAAAA AATCCTGCAG
ATTTCAAAGA ATCTGGTCAT CGTAGCTGAA AACGTTGAAG CTGAAGCTCT GGCTACTCTG
GTAGTCAACA AGCTGCGCGG CAACTTAAAC ATCTTGGCTG TCAAAGCCCC CGGCTATGGC
GACCGCCAGA AGGCCATGCT GGAAGATATG GCTATCCTGA CCGGTGGTCA TGTAATCAGC
AAGGAAGCCG GCCGCAAGCT GGATTCCGTA ACCGAAGCTG ACCTTGGTCA TGCCCGCAGG
ATTGTTTCCA ATAAAGACAA GACCACCATC ATTGACGGCG AAGGCTCTGC CGAAGCTATC
AAGGATCGCA TCAAGCAGAT TAAGGCCCAG ATTGAAGAAA CCGAATCTGC CTTTGACCGC
GAAAAACTGC AGGAACGCCA GGCTGCTCTG GTCGGCGGCG TAGCCGTTAT CGCCGTAGGC
GCTGCTACCG AAACCGAAAT GAAAGAACGC AAAGCCCGCG TTGAAGATGC TCTGGCTGCC
ACCCGTGCCG CCATTGAAGA AGGCATCCTG CCCGGCGGCG GCACCGGCCT CTTGAATGCC
CTGCCCTGCC TTGATGCCCT GAAACTGGAA GGCGACGAAG CCACCGGTGT CAATATCGTC
CGCAAGGCTC TTATTGAACC CGTCCGCTGG ATTGCCACCA ACGCCGGCAA AGACGGCAAC
GTCATTGTTG ACAAGGTCAA GAACTCACCC GTCGGCCATG GTTACAACGC TGAGAATGAT
GTCTTCGGCG ATATGGCTGA AATGGGTATC ATTGACCCCA CCATGGTTGT CCGCTCCGCC
CTTGAGAACG CCGCTTCTAT TGCCAACATG GTTCTCATCA CCGACTCACT GGTAGCTGAC
ATCCAGGAAA AAGCCCCTGC CGCCCCCGGC CCTGAAGCCG CAGGTATGTA CTAA
|
|---|
| Protein sequence | MAKQIIFGEK VRVSLKKGVD TLANTVRVTL GPKGHPVALE RKWGAPTVID DGVTIARDIE
LPDAFENMGA QLVKEAATRT SDAAGDGTTT SIVLAQALIN EAFKNIAAGA EPINLKRGIE
KAVAALKAQL RKNSTPVKGK QQIVQVATIT GKDPEIGNLI ADVMDKVGKD GVITIEESRG
LRYETSYVEG MQFDRGYISA YFVTDPGRME SVMEDATILM TDRKIETVAE LLPALEKILQ
ISKNLVIVAE NVEAEALATL VVNKLRGNLN ILAVKAPGYG DRQKAMLEDM AILTGGHVIS
KEAGRKLDSV TEADLGHARR IVSNKDKTTI IDGEGSAEAI KDRIKQIKAQ IEETESAFDR
EKLQERQAAL VGGVAVIAVG AATETEMKER KARVEDALAA TRAAIEEGIL PGGGTGLLNA
LPCLDALKLE GDEATGVNIV RKALIEPVRW IATNAGKDGN VIVDKVKNSP VGHGYNAEND
VFGDMAEMGI IDPTMVVRSA LENAASIANM VLITDSLVAD IQEKAPAAPG PEAAGMY
|
|---|
| |