| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1163 |
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| Symbol | |
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| ID | 5131339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | + |
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| Start bp | 1137734 |
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| End bp | 1140082 |
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| Gene Length | 2349 bp |
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| Protein Length | 782 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640530088 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001214620 |
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| Protein GI | 147669802 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGGTTGG GAATGTTACA AAACAAAGTG AAAGATACAG AACTTCGCAA ACTGGTAAGC
AAACGAGTGG CTGATTATTT GTCCAGCCAC AATTACCAGG TGGAAAGTGA TGTTAAAATA
ACCGGGCAAT CCGGTATAGA GCATATCTTT GACATCGTAG CCCGCCGAAA TGATGGGTTT
ACCGCCAGAA CTATGGCTGT TTGCATAATT CTGGGTTCAA ACCAGGAGGA AGAAAGCAGC
TCTATTTTCA ACTTTGCCAA CAAAGCCTTT GATACTGGCA TAAATGAACG TATCCTGATT
GCCATACCCA AACTGACCCC GGAAACCCGC AATCTGGCTG AAAAACAGCG GATAAAAGTC
TTTGACGAGG ACCGTTTGGA AGATCTGTTG ATTACCAGCA CCAAGCGCCC CAACCGTCTG
GAAGGCATGA ACAACATCTC CTCTCGCGAA GACCTTATTA AGGCCCTGAC CAATCTGGGC
TACACCATAA GGGAGAATGC CCGTATCAAA GGGCGTTCAG GCATTTCACA TGTTTTTGAT
GTGGTGGCCA GTGATATTAA CACCGAAAAC TACACTTTAG GTATAGATAT TTTAAAGAAG
CAACCTGCTC TGGAACTTCA GGATGTGGCT CTCTTTGATG CCAAAGCCTT TGACTGCGGC
ATATCTGACA AAGTTATAGC TACCACAGCC AAAATAACAC CTGATGCCCA GCAATTTGCT
GATGCCCAAA AAGTTAAACT TATAAAACTT AACCCTATCC CTATCTCCAC TGAAGAGAGT
GCCGCTATAA CTACTGCCGA AGAGGTTGTA AAAACTTCGG CTAAAACCGA ATCCAAAAAT
GGCAAACCTG CTATAACCGA CCTGCGTCAG TCACCACGCC CCGAAGCACT TAAACTTATC
CCTGAGGTGC TTGCCCGGCG TTATACCGCT ATACCTCTAA ATATAGTGGG CAATACCCTT
GAAATGGCTA TGGCTGATCC GTCTGACATT CTGGCACTGG AAGCTTTCTC CGCCCACTCC
AAACGTCGTA TCAAGCCAAT ACCGGCAGAC GCCCGCGAGA TACGCGAATC TATAGACTTT
AACTACAAAG GCTACGGGGA TATTGAAAAA TATCTCTCCC GCATGTCTAT TCCCAGTGAA
ATTACAGATG ACCGTCTGGC TATTGATGCG GCTATTGACG CACCTCTAGC CCAGGCCCTG
AATCTTATTA TTGAAGAAGC GGTGAAAGCC CGCTCATCAG ACGTACACAT TGAACCCAAC
GAAGACCGCC TGCGGGTGCG TTTCCGCATA GACGGCACTC TACAGGATAT GATGTCCCTG
CCTATCACCG CCCACCGGGC TATCATTTCC AGAATTAAAA TTTTGGGTGA CATGAACATA
GCAGACCATT TCCACGCTCT GGACGGTCAG TTTAGCGTAA ATGCCGGCGG ACGGGAGATA
GATATCCGGG CGGCAACTGC CCCTACCGTC AATGGAGAAA TGTCTGTTTT GCGGTTGCTG
GATAAGAGCC GGGCTACTAT TGAACTTTCC CAGCTAGGCT TTTTACCCGA AAGCCTGGAA
AAATACAACA AGATGCTCAA AGTACCCTAT GGCATGATAC TTATCAGCGG CCCTACCGGC
GCTGGGAAAA CCACTACCCT TTATGCATCT ATAAATTCGC TGGACATCAT GCGCCAGAAT
ATTATTACCA TAGAAGACCC GGCAGAATAC CGTTTTAAAG ATATAAATCA GATACAAGTA
AATGTGCAGG CCGGCATTAC CTTTGCCAGC GGTCTGCGTT CTATACTGCG CCTTGACCCT
GATGTGATAC TGGTAGGCGA AATACGTGAT TCGGAAACGG CCAATATAGC CGTTCAGGCA
GCCCTTACCG GCCACCTTAT GCTTTCATCC ATCCACGCCA ATAATACTAC CGGCGTTCTT
TACCGCTTGA TAGACCTTGG GGTAGAACCA TTCCTTATTG CCTCAGCCGT GGTGGGAGTA
GTAGCCCAAC GCATGGTCAG GCGGGTTTGC CCGTACTGCC AGCACACTAT TGAGGTACCG
GTTATTGAGC AGGTAGCCTA TGAACGTGAA ATTGGGGAAA AACGAACCAA ATTTGTATAT
GGTAGCGGCT GTAAATCATG TGCCTTTACC GGCTATTTGG GACGGGTGGG CCTGTTTGAA
ATAATGTCTA TAAGTGACGA GCTCAGACGG CTTATGCTGA GCGGAGCTTC GCCCTCAGAA
ATACACAATC AAGCTATCAA AGACGGCATG ATTACCATGA TGAAAGATGG TATGCTAAAG
GTTAAAGATA ATGTTACAAC ACCCTCCGAA GTACTCCGCA GTGCCTATTC ACCGGAGGAG
CAGTATTGA
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| Protein sequence | MWLGMLQNKV KDTELRKLVS KRVADYLSSH NYQVESDVKI TGQSGIEHIF DIVARRNDGF
TARTMAVCII LGSNQEEESS SIFNFANKAF DTGINERILI AIPKLTPETR NLAEKQRIKV
FDEDRLEDLL ITSTKRPNRL EGMNNISSRE DLIKALTNLG YTIRENARIK GRSGISHVFD
VVASDINTEN YTLGIDILKK QPALELQDVA LFDAKAFDCG ISDKVIATTA KITPDAQQFA
DAQKVKLIKL NPIPISTEES AAITTAEEVV KTSAKTESKN GKPAITDLRQ SPRPEALKLI
PEVLARRYTA IPLNIVGNTL EMAMADPSDI LALEAFSAHS KRRIKPIPAD AREIRESIDF
NYKGYGDIEK YLSRMSIPSE ITDDRLAIDA AIDAPLAQAL NLIIEEAVKA RSSDVHIEPN
EDRLRVRFRI DGTLQDMMSL PITAHRAIIS RIKILGDMNI ADHFHALDGQ FSVNAGGREI
DIRAATAPTV NGEMSVLRLL DKSRATIELS QLGFLPESLE KYNKMLKVPY GMILISGPTG
AGKTTTLYAS INSLDIMRQN IITIEDPAEY RFKDINQIQV NVQAGITFAS GLRSILRLDP
DVILVGEIRD SETANIAVQA ALTGHLMLSS IHANNTTGVL YRLIDLGVEP FLIASAVVGV
VAQRMVRRVC PYCQHTIEVP VIEQVAYERE IGEKRTKFVY GSGCKSCAFT GYLGRVGLFE
IMSISDELRR LMLSGASPSE IHNQAIKDGM ITMMKDGMLK VKDNVTTPSE VLRSAYSPEE
QY
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