Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DehaBAV1_1159 |
Symbol | |
ID | 5132444 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. BAV1 |
Kingdom | Bacteria |
Replicon accession | NC_009455 |
Strand | - |
Start bp | 1135818 |
End bp | 1136357 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640530084 |
Product | ECF subfamily RNA polymerase sigma-24 factor |
Protein accession | YP_001214616 |
Protein GI | 147669798 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02952] RNA polymerase sigma-70 factor, TIGR02952 family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.260495 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCAAACAG AAAGACACCT GGTTGAGCTT GCTCAACAAA AAGATGAGCA GGCATTTGCC CGACTATATG AGGAATATTT CGATAAAATT TATCGCTATA TTGCTTTGAA GATTGGCAAC AAAATGGAGG CCGAGGATTT GACCCAACAG GTCTTTATGA ACGCTCTCCG GTCTATGTCT TCCTTTAAAT GGCAAGATAA TACACCATTC TCTGCCTGGC TATACCGTAT TGCCCATAAC CAGATAGTAG ACTACCTGAG GAAGAAAAGC CGCCAGCCCA CGGTGGATAT AGAGATAATT GCCCCGCTGG CTTGTGCCGA TGACCCGGTG GAAACTACCG AAGTAAATAT AGACTATGAG AAGTTTGTGA AGGTATCTGC CAAACTTACC CCCGCCCAGC AGGAGGTAAT TTCCCTGCGG TTTTCTTCGG ATTTGCCTAT CGCCGAGGTG GCCAAAATAA TGAACAGAAC TCCGGGTGCG GTCAAGGCGC TGCAGCACAG TGCGGTATCC TCACTCCGCC GAATGCTCTC TGGAGCGTGA
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Protein sequence | MQTERHLVEL AQQKDEQAFA RLYEEYFDKI YRYIALKIGN KMEAEDLTQQ VFMNALRSMS SFKWQDNTPF SAWLYRIAHN QIVDYLRKKS RQPTVDIEII APLACADDPV ETTEVNIDYE KFVKVSAKLT PAQQEVISLR FSSDLPIAEV AKIMNRTPGA VKALQHSAVS SLRRMLSGA
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