| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1139 |
|---|
| Symbol | |
|---|
| ID | 5132430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 1121200 |
|---|
| End bp | 1122120 |
|---|
| Gene Length | 921 bp |
|---|
| Protein Length | 306 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640530064 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001214596 |
|---|
| Protein GI | 147669778 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3872] Predicted metal-dependent enzyme |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00478195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGCAGATA AATTTTATTA CGGCGGACAG GCAGTACTTG AAGGGGTCAT GATGCGCGGC
CAGAAAAATC TGGTCACGGC TGTACGCAAC CCCGACTGCG AAATAACTAC CGAAATCAGG
CCGCTGCATT CGCTTTATAC CAGCAAGTGG CGCAAAATGC CCATTATTCG GGGGGCGATT
GTACTCATTG AAAGCATGGT TCTGGGTATT CAGAGCCTTA TATATTCGGC AAACATAGCT
CTTAAAGAAG AGGAAGAAGA ACTTTCAGGC GGGCTTTTGT GGCTGATGCT GCTGGTATCA
CTGGGTTCCA GCGTAGCCCT TTTCTTTCTG GCCCCCCTGT TTATAACCAA TCTGATGAGT
TCCTTTCTGG AATCCGCCGT TTTGTTCAAT CTGATTGAAG GTCTGGTAAG ACTGATAATA
TTTGTCATTT ATATAAAGCT GGTTACCCTG ACGCCGGATA TTAAACGGGT TTTCGGCTAC
CACGGGGCGG AACATGCAAC CATAAATGCC TTTGAAGCCG GCGTGCCGCT TGAGATAGAA
CGGGCAGCCG AAATACAATC TTACCCTACC GCTCACCTGC GGTGCGGTAC CAGCTTTCTG
CTGGCGGTGA TGGTGATAGC CATACTGGTA TTCAGCCTGA TAGGCAAGCC ATCTTTTGCT
GTTATGTTCG CTTCACGGAT AATTCTGGTA CCGGTGATTG CAGCTTTGAG TTATGAATTC
ACCCGTTTCA GTGCCGGACA CTGCCATAAC CCGATAGTCC ACTTTTTAAT TAAACCCGGT
CTGGCTTTGC AGTCACTCAC CACCCGCCCG CCGGATATAA AACAAATCGA GGTTGCCATC
ACTGCCCTGA AAAAGACAGT AGAGATGGAC AACCCCGATT ATATTCCCCA AACCTGCCCC
GAATGCGAAG CGGCTACTTA A
|
|---|
| Protein sequence | MADKFYYGGQ AVLEGVMMRG QKNLVTAVRN PDCEITTEIR PLHSLYTSKW RKMPIIRGAI
VLIESMVLGI QSLIYSANIA LKEEEEELSG GLLWLMLLVS LGSSVALFFL APLFITNLMS
SFLESAVLFN LIEGLVRLII FVIYIKLVTL TPDIKRVFGY HGAEHATINA FEAGVPLEIE
RAAEIQSYPT AHLRCGTSFL LAVMVIAILV FSLIGKPSFA VMFASRIILV PVIAALSYEF
TRFSAGHCHN PIVHFLIKPG LALQSLTTRP PDIKQIEVAI TALKKTVEMD NPDYIPQTCP
ECEAAT
|
|---|
| |