| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1123 |
|---|
| Symbol | |
|---|
| ID | 5132017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 1110721 |
|---|
| End bp | 1111758 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640530047 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001214580 |
|---|
| Protein GI | 147669762 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1180] Pyruvate-formate lyase-activating enzyme |
|---|
| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGAAG CCTTGCTCTA CCAAAAGATG CCAAACGGAG TAATCCGCTG TCATACCTGC
CAGTGGAATT GCCGTATAAA TCCCAATCAT TTGGGTGTTT GTCAGGTTTA TCAAAATATA
AACGGTTCTT TTTTTAGTCT GAATTACGGG CGTACCTCCT CGGTGGCGGT AGATCCCATA
GAGAAAAAAC CGCTTTATCA TTTCTATCCC GGCAGTCAGG TATTTTCACT GGGCAGTTGG
GGATGCAACT TTCATTGTAC CGGTTGCCAA AACTGGGAGA TTGCCTGCCC TGATACTTAC
GAAAGACTGT TCAGCTCCCG AACCCTTCTG CCCGAACAGG CTGTAAGTAT GGCCAGAGAA
CACCACTGCC AGGGTATCGC CTTTACTTAT AACGAACCTA CGGTTTGGTT TGAATATACG
CTGGATTGTG CCCGTTTATC CAAAAATAAC GGGCTTTATA CGGTATATGT AACCAATGGT
TATATGACCG CGGATGCGCT GGATACTATT GGCCCGTATA TGGACGCTTT CAGGGTGGAT
ATAAAGGGTT TCAAGGCGGA TACCTATAAA AAGCTATCCA AAATCCAGCA TTGGGAAAAG
ATACTGGCTA CCACCGAAAG GGCCAAGTCC CAGTGGGGCA TGCACGTGGA AGTGGTAACA
AATATTATTC CCACCTATAA TGATGACCCT GAACAGCTTA CCGGGATAGC CCGCTGGATA
AAAACCCGTC TGGGAGAGCT TACTCCCTGG CACGTCACCC GTTTTTATCC CTGCCGGGAT
ATGCTGGATG TTCCTCCAAC GCCTGTTGAG ACACTGGAAA AAGCAGTGGA AATAGGTCAG
GGGGAAGGGC TGAAATATGT ATACATGGGG AATGTGCCCG GACACAAAAG CGAGACTACC
TGCTGCCCCA AATGCGGGCA GGTACTTATC CGCCGCCATG GTTATGATAC TGAAATATGC
GGATTGGATA ATGATCATTG CCGGCACTGC CGGTCAAAGC TTTATATCCG GCTTTCCTCC
CCGACGGAAG GTGAATAA
|
|---|
| Protein sequence | MHEALLYQKM PNGVIRCHTC QWNCRINPNH LGVCQVYQNI NGSFFSLNYG RTSSVAVDPI
EKKPLYHFYP GSQVFSLGSW GCNFHCTGCQ NWEIACPDTY ERLFSSRTLL PEQAVSMARE
HHCQGIAFTY NEPTVWFEYT LDCARLSKNN GLYTVYVTNG YMTADALDTI GPYMDAFRVD
IKGFKADTYK KLSKIQHWEK ILATTERAKS QWGMHVEVVT NIIPTYNDDP EQLTGIARWI
KTRLGELTPW HVTRFYPCRD MLDVPPTPVE TLEKAVEIGQ GEGLKYVYMG NVPGHKSETT
CCPKCGQVLI RRHGYDTEIC GLDNDHCRHC RSKLYIRLSS PTEGE
|
|---|
| |