| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_1088 |
|---|
| Symbol | |
|---|
| ID | 5131906 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 1078209 |
|---|
| End bp | 1078961 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640530013 |
|---|
| Product | 3-oxoacyl-[acyl-carrier-protein] reductase |
|---|
| Protein accession | YP_001214546 |
|---|
| Protein GI | 147669728 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | [TIGR01830] 3-oxoacyl-(acyl-carrier-protein) reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.885603 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAACA TGCTTGGTTT AAATGGCAAA GTAGCCCTGA TTACCGGCTC CGGCAGGGGC
ATAGGCAAAG CCATAGCTTT GCGGTTCGCC GAAGCAGGGG CAAAAGTGGT AGTAAACAGT
CTGTCTCCCA ATGGTGAAGA AACGGCCTCT CAGATACGTT CTCAGGACGG ACAGGCCATA
TTCGTTCAGG CTGATGTAAG CCAAAGTAGC GGGGTAGAAG CCCTTTTCAA AGCCAGCCAG
GAAGCCTTTG GCGGAGTGGA TATACTGGTA AACAATGCCG GCATAACCCG TGACCAGTTG
ACCATGCGTC TGTCCGAAGA AGACTGGGAC AGTGTAATAC AAACCAACTT AAAGAGTGTT
TTTTTGTGTT CCAAGGCCGC CCTCCGCCAG ATGCTGAAAA ACCGCTGGGG ACGGATAATA
AACCTCAGTT CCATAGTCGG TCTGAAGGGC AACCCGGGGC AGGCTAATTA TGCCGCCGCC
AAAGCCGGCA TTCTGGGATT CAGCTATTCT TTGGCTAAAG AAGTGGCCAG CCGCAATATT
ACTGTCAATT CCATAGCACC CGGTTTTATA GAAACCGATA TGACCGCAGC CCTGTCTGAC
GAACAAAGAC AGGCTATAAC AGCCCGAATA CCCATGCAAA AACTTGGCAC AGTGGAAGAT
ATAGCCGCCT GTGCATTATA CTTGGCACAA GAAGATGCCA AATACATTAC CGGACAGGTA
ATTTGCCTGG ACGGCGGTAT GTCTATAATA TAA
|
|---|
| Protein sequence | MGNMLGLNGK VALITGSGRG IGKAIALRFA EAGAKVVVNS LSPNGEETAS QIRSQDGQAI
FVQADVSQSS GVEALFKASQ EAFGGVDILV NNAGITRDQL TMRLSEEDWD SVIQTNLKSV
FLCSKAALRQ MLKNRWGRII NLSSIVGLKG NPGQANYAAA KAGILGFSYS LAKEVASRNI
TVNSIAPGFI ETDMTAALSD EQRQAITARI PMQKLGTVED IAACALYLAQ EDAKYITGQV
ICLDGGMSII
|
|---|
| |