Gene DehaBAV1_1066 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDehaBAV1_1066 
Symbol 
ID5131795 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDehalococcoides sp. BAV1 
KingdomBacteria 
Replicon accessionNC_009455 
Strand
Start bp1056343 
End bp1057419 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content49% 
IMG OID640529991 
Producttwitching motility protein 
Protein accessionYP_001214524 
Protein GI147669706 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT 
TIGRFAM ID[TIGR01420] pilus retraction protein PilT 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGATAGAGA TATATGAACT TCTGAAACTG GTAGTGGACA AAGATGCTTC AGATTTGCAT 
ATCAAGGCCC CCACCTCACC TGTCCTGCGG ATAAACGGAG ACCTGATACG CCAACCCCAA
TACCCGCCGA TTACCCCGGA AGATGCCGAA CAAATTTTCA AGTCCATCAC CACCCCTCAC
CAGCAAGAGG TATTTGCATC TGATAATGAA CTGGATTTTG TTTACTCCGT CACCAATCTG
GCCCGCTTCA GGGTAAATGT ACTCCGCCAG AGAGGCAGTC TAAGTCTGGC CTTCAGGGTG
GTACCCTTTG TTATCCGCAA TATAGACGAA CTTAACCTGC CCCCCATTCT GAAAAGCCTG
ATCATCCGCC CCAGAGGGCT GTTGCTGGTT ACCGGCCCTA CCGGTAGCGG CAAATCTACA
ACTCAGGCTG CCATGATAGA ACACCTGAAC AACTGCCGCA GATCCAATGT GATTACTATT
GAAGACCCCA TAGAGTATCT TTTCCATGAT AACGAGTGCA TTATATCCCA GCGTGAACTT
GGGGGAGACA CCCGTTCTTT TGCTATAGCT TTGAAACACG CCCTCCGCCA TGACCCGAAT
GTAATTGTAA TTGGCGAAAT GAGAGACCTG GAAACCATAT CCACCGCTAT TGCCGCCGCC
GAAACAGGCC ATTTGGTAAT AGGCACACTC CACACCACCG ACGCCCCCCA AACAGTAGAC
CGTTTGATAG ATATGTTCCC CCCTTCCCAA CAGCAACAAA TTCGCCTCCA GCTTTCCCAA
GTATTGGAAG CCATTATCTC CCAGACACTT ATCCCCCGCA TGGATAACAA AGGCCGGGTG
GCCGCCTTTG AAATACTGAT TGCCAACAAT GCCGCCCGCA ACCTTATCCG CGAGGGTAAA
ACTTTTGAAC TGCTGACAGT GATGCAACTG GGTAAAAACG ATGGCATGCA AACGCTGGAT
AATGAACTGA CCCGTCTGGC CAAAGAAGGA ATCATAAGTG TAGAAAACGC TGTATTAAAA
AGCAGTAATC CGGAAAGATT GCGCAAATCT TTGTCCAATC TAGGTCACGG GGCCTGA
 
Protein sequence
MIEIYELLKL VVDKDASDLH IKAPTSPVLR INGDLIRQPQ YPPITPEDAE QIFKSITTPH 
QQEVFASDNE LDFVYSVTNL ARFRVNVLRQ RGSLSLAFRV VPFVIRNIDE LNLPPILKSL
IIRPRGLLLV TGPTGSGKST TQAAMIEHLN NCRRSNVITI EDPIEYLFHD NECIISQREL
GGDTRSFAIA LKHALRHDPN VIVIGEMRDL ETISTAIAAA ETGHLVIGTL HTTDAPQTVD
RLIDMFPPSQ QQQIRLQLSQ VLEAIISQTL IPRMDNKGRV AAFEILIANN AARNLIREGK
TFELLTVMQL GKNDGMQTLD NELTRLAKEG IISVENAVLK SSNPERLRKS LSNLGHGA