| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0979 |
|---|
| Symbol | |
|---|
| ID | 5132375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 966773 |
|---|
| End bp | 971665 |
|---|
| Gene Length | 4893 bp |
|---|
| Protein Length | 1630 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640529903 |
|---|
| Product | Ig domain-containing protein |
|---|
| Protein accession | YP_001214437 |
|---|
| Protein GI | 147669619 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0609358 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTTTGA AGCAAGGCCT GAAACTATTT AGCCGTTTAA CACTCACTTT TGCCCTGTTA
TTCCCCACCC TGTTGGTTAT TTCCCCCGCC AGTACACTCT CCGCCAATAC CTTCGCCGCA
TCAAGCCAGC TCTCGGTAAT AGACGGGGTC TACACTGATT GGGGAAGTAT GGCAACTCCC
AGCCAAGGGG TACATGTCTG CACTGACTAT TCCAATAACG GCGCCGGTGA TGGATCCGGC
TTCACTAATA CCAGCAATGA CATTACCAAT ATCTGGGTAG CCCTTTCCAG CAGTTCAAGC
GGACTGCTTC CGGCCAGCCC ATCCAACCTT ATAGAAAATA TTTACTACCG CATAGACACC
CGTGGTACTT CCATGCACCC CGGCCAGAGT TATTTTATCC AGCTAAATCT GGGTATTGCC
CCGGCAGGTA AAGCTGACCA CCTCCTCCAA ATATGGGCGC ATAGCACCGA AACCCCTCAA
ATCAAAATCG TACTTTACCA GTATCAGTCA CCCTACCCAA ATATAGGAGC ATTTACCAGC
GGCAGTTTTA TCGGCTTGCT TTCCAATGTA GCCAATCCTT TCCCCGGTTT TACCGGTACG
GTAGATGCCA ATGCCGCCGG ACGATTGGCG ATTTCTGACG GAACCCACTA CAGTTTTGAA
GTCAAAATAC CCTTTAACTG GTATACAGAT AATGGCACAG TTACCAATGA CGGAAGCGGT
ATACCTGCCA TGGTAACCGC AGTTTATTCC AGTACCGGCT CCATCGGTGC AGTGGGAACG
GTTAAAGATA CTGTTACCAA CAGCTTTGGA GAAACCTGTG CCGCCAAAAT TGATGTTACT
ACCGGTGATG TAAACCTGTT AACCCCGTAT CTTAGTTTTA CCACTTCTCC CCAAACAGTG
GGAGCGGGGC TCTCCTCATC TATCATTACC GTTAAGCTTA ATGATGCCTT CGGCAACCCT
AAAAATTACG CCACTGATAC TTATTTAAAT CTTGCCAGTT CTTCACCCAC CGGCATTTTC
AGTCTGACCC CGCTGGGTAC AGCAATAACC CAGATACTGA CTAATAACAG CCAGTCAACT
GTGTCTTTTT ACTACCGCGA TGTTACGGCG GGGAATTTCA CTATACAAGC TTCGGAAACA
CCTTCCAGAG GTTATACAGA TACCACCCAG ACCATTACAA TAACTACCGG TGCGCCAGCC
TTGATGACCC TAAGCCCGGC TGCATCAAGC AATTATATCT ACACTTCCAG CAATTATTCG
GCCCGCCTGA CCGATGCTTA CGGCAACCCT ATATCAGGTG CAGCTATAGA TTTTTCACTC
AGCGGAACAG GTAGTATAAC TTACGAAGAC AGCTTGACAG ACTCACAGGG ATATGCCCAT
GCCATACTCA CTTCCACCAC TGCAGGCATA GCCACCCTGA CTGTTACCTC CGGTTTGCTA
AGTGACAGTT CTGACCAGAC ATGGACTGGG GCAAACCATT TTGAGGTTAT CATAAGCCCC
ACTCCGGATA TTGTAGCCGG GGAATATTTC AACATAACTG TAAATGCCAG AACAGCGGAT
AACAGCCTGA TAACTACCTA CAATGGAACG GTTGACCTTA CCGACCTTAC CGGTACACTG
AATATAACCA GCCTTACGCT GATAAATGGA ACTGCTACTG TTACAACCGC CCAGATTACC
CAATCTTACG AACATGACTC TATAACAGCC ACAGACGCTA CAACCAGCGG CACCAGCAAC
CATTTTAATG TGATAGCTGC AGACATCTAC CAGATAATAC TGTCTGCTTC TGATACCAAC
CCCACTGTAA ATGATGCCGT ACTTGTAACA GCTACTGCCA CAGATGCCTA TGGTAACCCG
GTTTCCGGCA GAACTATCAG CTGGGATGCA CTGGTGGGAG TAGGCGCGTT AAACCCAATA
GACACTCTTA CCAATACCAG CGGGCAGGCA CATGCCAACC TGACTTCCAG CACATCCGGT
GATTCTACCG TTTCGGTTAC TTACGGCCTG CTTAACCCCA GTGTTACGGT AAGCTGGCAA
GCAGGTACAC TAGCCTATTT TGAAATAGAG TATATAAATA CTGTCACAGC CGGAATGCCA
ATAGACTGTA CCATTCACGC CAAGGATGCA GATGGCAATA CCCTGACAAG TTATACCGGT
CCGGCTACCC TCACCTTTTA TAGACTCTCC GATGGAGCAA AGTTTTCGTA TCCAACTATA
AATTTTGTAG CCGGAAATTT TGGCACTCTG CATATAAGTT ACAATGTTGC CGGAGAAAAC
TATTATCTGA TAGCTGTTGA CCAGACAGAC CCCACTATAA CCGGCACCAG TAACTATTTT
GATATACTGG CAGATGCTGC CGCCAGTATA AGTCTCTCTC CTGACACCAG TGAAGATTTG
GTGGGTAATA CCCAGCATTT CACAGCCACT ATTACCGATG CTTATGGCAA CCCTGTTCCC
AGTGAAGCAG TAAGCTGGTC TCAGATAGGC TCAAATACTA TAAACTATTC CGAAGATTTT
ACAGATGCAA ATGGACATGC CCACGCAAGT CTCATCTCTG CCGTAACCAC CTCATCCAGC
GGCTCTCTTA CTGCTACCAT CACAGCCGGC AGTGACAGCT CAGATGTAGA CTGGATAGCG
GTAGACCGTT TTGAAGTTAT TGTCAGCCCC ACTCCGGATA TCGTAGCCGG AGAAAATTTC
AGCATAACGG TAAATGCACT TGATGACTCG GATACCCTGA TAACTCTTTA CAATGGAACA
GTCAACCTGT CTGATATGAC CGGCTTTCTC AGCCCCGTTA CTGTCACGCT GGTGAACGGC
ACAGTCACCA TTACTGATGC CACCATTACC AAAGCTTACG AACATAACCA ACTATTAGCC
ACAGACAGGG TAACCAGCGG GGAAAGTAAC CTCTTCAATG TAGTGGCAGG CACTGCAACA
ACCCTTGACC TTACTCCGGA TATTGACAGT GTCATTGCCG GCAGCCTTCA AACAGTGGCA
GTAAGCGTAT ATGATGCCTA CGGAAATCTG GTAACCGGAT ATACCGGCAC AGTTGTGTTT
ACTTCTTCAG ATACACTTGC AACCCTGCCT TTTGATTATA CTTTTACCGC AACAGATGCG
GGTACCCATA CCTTTAGCGG TGAACTTATA CTCCGTACTG CTTCTTCAGT TACTCTGACC
GCAGACGATT CATCTCTGTC GGACACCTCA AACTATACTG TTGGCACTGC CGAAATAGCC
CACTTTGTAT TTACCTCCAT ATACAGCCAT CAGGACGCAG GCGTGCCATT TGATATAACC
GTACTGGCCA AAGACGAATT TGGCAATACC ATTACGGACT ATAACGGAGC GGTAACCATA
ACAGACCAAA CCGGCAGCCT ATCCCCCCAG ACTATTACCC TGACAAACGG CACAGGCACC
ATAAGCGTAA GCGTCACCAC TGCCTATCTG GGTGATTTTT TGAATGCTAC CGACGGCACT
TATAGTGGAA AAAGCGGTAA CTTTGATGTA TATGCCGGAG CACCTTTCAG CCTGAGCCTT
AACCCTGAAA CTGCAAGCGG CTATACCGGT GGAACCACCA TTCTAACGGC TTTGTTGACA
GACCAATACG GCAACCCTGT ACCAAATCAA ACCCTTGACT GGGAGATTAT CAGCGGTTCG
GGCATTTTCC CTGACAGCGG TATTACCACC CATACCACCA CCACCGACCT TAACGGGCAG
TCTGGGGTAG CAGTTCAATC TAACACCATT GGTGCCACCA CCATACAGGT GACCCATGCG
GCTCTCAGCG ATACTTCAGT AATAAACTGG GATATAAATT ATGTTTACCA TATCCAGTTC
ACTATCATAC CCGGTACAGT AAGTGCGGGG GTACCTTTCC ATGTAACTAT CAGCATCGTA
GACCAGTTTG GCAATATAGC TACCGGCTTT AACGGGCCGC TTACCCTCTC TGACCTTAGC
GGCAGTCTAT CACCGGTAGT AGTAAATGTG GTAAACGGAG TAGCTATAGT CAACCTTACT
ATCAATACTC CATTTAGTTC TGATTACATC ACCGCAAACG GTTTCGGCCT GAGAGGCATA
AGCAATACTT TCAATGTAGT GGCAGGGTCT GCACCGGCAT ATCGCTTAGA CCTTACCCCA
AACAGCGGTA CAGCCACTGC AGGAGACCCT GTAAGCGTCA CTGTGACCAT TTATGACCAG
TTCGAGAAAA TAGCCAGCAC ATATACGGGC ACAGTCCATT TCAGCTCCTC AGATTTGGCA
GCCCTGCTGC CCGCCAATTA CACCTTTACA ACGGCAGATG GAGGCGTTCA TACCTTTATT
CTGGGTGTTA CCTTTAATAC CAACGGCACT CAAACCCTAA CAGCCACAGA TACAAACACC
GCATCGCTTA CAGATACCTC CAGCTGGGTT ATTACCGGTG CTGACGGCCC CTCACAACCA
CCAGTTATCC CGCCTGTGAA CCCGCCGGTC ACACCCCCGG TTAATCCTCC GGTGACGCCA
CCGGTGACAC CGCCGGTAAC TCCTCCTAGC GCATCTTCAT CCGGTTTTCC GGTTTGGGGC
TGGATACTAA TAGCGCTAGT GACTATCCCA ATCCTGCTGT TGGGTGTGGT TAATATCCAA
AGCGGTGTTT ACGGGCATGT ACGCTGCACC AGTGAAAACA AGCTGATAAA AGATGCCCGG
GTGATTTTGA AAGATTCACA AGGAAACATA GTAAAGGAAG CCATCACTGA TGCCAACGGC
TATTTCTCCT TTGGAAGGCT TGCAACCCAA ACTTATTATC TGACTGCTAC CTACCCCAAC
TGTGACCCCA GCCCCGCCAG CCAGGGGATG GTAAAAACAG GTAAATTAAA ACGCATTCAC
CATGACCTTA CGCTGGTAAT GCCCAAAGAA TAA
|
|---|
| Protein sequence | MILKQGLKLF SRLTLTFALL FPTLLVISPA STLSANTFAA SSQLSVIDGV YTDWGSMATP
SQGVHVCTDY SNNGAGDGSG FTNTSNDITN IWVALSSSSS GLLPASPSNL IENIYYRIDT
RGTSMHPGQS YFIQLNLGIA PAGKADHLLQ IWAHSTETPQ IKIVLYQYQS PYPNIGAFTS
GSFIGLLSNV ANPFPGFTGT VDANAAGRLA ISDGTHYSFE VKIPFNWYTD NGTVTNDGSG
IPAMVTAVYS STGSIGAVGT VKDTVTNSFG ETCAAKIDVT TGDVNLLTPY LSFTTSPQTV
GAGLSSSIIT VKLNDAFGNP KNYATDTYLN LASSSPTGIF SLTPLGTAIT QILTNNSQST
VSFYYRDVTA GNFTIQASET PSRGYTDTTQ TITITTGAPA LMTLSPAASS NYIYTSSNYS
ARLTDAYGNP ISGAAIDFSL SGTGSITYED SLTDSQGYAH AILTSTTAGI ATLTVTSGLL
SDSSDQTWTG ANHFEVIISP TPDIVAGEYF NITVNARTAD NSLITTYNGT VDLTDLTGTL
NITSLTLING TATVTTAQIT QSYEHDSITA TDATTSGTSN HFNVIAADIY QIILSASDTN
PTVNDAVLVT ATATDAYGNP VSGRTISWDA LVGVGALNPI DTLTNTSGQA HANLTSSTSG
DSTVSVTYGL LNPSVTVSWQ AGTLAYFEIE YINTVTAGMP IDCTIHAKDA DGNTLTSYTG
PATLTFYRLS DGAKFSYPTI NFVAGNFGTL HISYNVAGEN YYLIAVDQTD PTITGTSNYF
DILADAAASI SLSPDTSEDL VGNTQHFTAT ITDAYGNPVP SEAVSWSQIG SNTINYSEDF
TDANGHAHAS LISAVTTSSS GSLTATITAG SDSSDVDWIA VDRFEVIVSP TPDIVAGENF
SITVNALDDS DTLITLYNGT VNLSDMTGFL SPVTVTLVNG TVTITDATIT KAYEHNQLLA
TDRVTSGESN LFNVVAGTAT TLDLTPDIDS VIAGSLQTVA VSVYDAYGNL VTGYTGTVVF
TSSDTLATLP FDYTFTATDA GTHTFSGELI LRTASSVTLT ADDSSLSDTS NYTVGTAEIA
HFVFTSIYSH QDAGVPFDIT VLAKDEFGNT ITDYNGAVTI TDQTGSLSPQ TITLTNGTGT
ISVSVTTAYL GDFLNATDGT YSGKSGNFDV YAGAPFSLSL NPETASGYTG GTTILTALLT
DQYGNPVPNQ TLDWEIISGS GIFPDSGITT HTTTTDLNGQ SGVAVQSNTI GATTIQVTHA
ALSDTSVINW DINYVYHIQF TIIPGTVSAG VPFHVTISIV DQFGNIATGF NGPLTLSDLS
GSLSPVVVNV VNGVAIVNLT INTPFSSDYI TANGFGLRGI SNTFNVVAGS APAYRLDLTP
NSGTATAGDP VSVTVTIYDQ FEKIASTYTG TVHFSSSDLA ALLPANYTFT TADGGVHTFI
LGVTFNTNGT QTLTATDTNT ASLTDTSSWV ITGADGPSQP PVIPPVNPPV TPPVNPPVTP
PVTPPVTPPS ASSSGFPVWG WILIALVTIP ILLLGVVNIQ SGVYGHVRCT SENKLIKDAR
VILKDSQGNI VKEAITDANG YFSFGRLATQ TYYLTATYPN CDPSPASQGM VKTGKLKRIH
HDLTLVMPKE
|
|---|
| |