| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0931 |
|---|
| Symbol | |
|---|
| ID | 5131653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 915656 |
|---|
| End bp | 916033 |
|---|
| Gene Length | 378 bp |
|---|
| Protein Length | 125 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640529855 |
|---|
| Product | endoribonuclease L-PSP |
|---|
| Protein accession | YP_001214389 |
|---|
| Protein GI | 147669571 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
|---|
| TIGRFAM ID | [TIGR00004] endoribonuclease L-PSP, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000470161 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGA AGTATTTTTC AGCACCTGGA GCACAAGGGC CGTATTCACT GGCGGTTAAA
GCAGGCGATT ACCTGTATAT TTCCGGACAG ATAGGCCACA CTGACGCAGA CGGTCGGCCT
TTGGCTAGTG TTGAGTCCCA GACCAAACGT TGTCTGGAAA AAATGGCCGA TCTTCTTAAG
ACGGCAGGTG CTTCTTTTGA TGATGTGGTA AAGACTACCG TATTTTTGAA GAATCAGGAA
GACTTTACCA AAATGAACGG TGTTTACACT ATATTTTTCA GCGGTGCAAA ACCTGCCCGT
TCCACGGTCA TTGCCGGCAT GGTGTTCCCT GAAATAATGG TAGAAATAGA GGCGGTAGCC
TATTTACCGG AAGCATAA
|
|---|
| Protein sequence | MSKKYFSAPG AQGPYSLAVK AGDYLYISGQ IGHTDADGRP LASVESQTKR CLEKMADLLK
TAGASFDDVV KTTVFLKNQE DFTKMNGVYT IFFSGAKPAR STVIAGMVFP EIMVEIEAVA
YLPEA
|
|---|
| |