Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DehaBAV1_0872 |
Symbol | truB |
ID | 5131770 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dehalococcoides sp. BAV1 |
Kingdom | Bacteria |
Replicon accession | NC_009455 |
Strand | - |
Start bp | 861739 |
End bp | 862641 |
Gene Length | 903 bp |
Protein Length | 300 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640529790 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_001214332 |
Protein GI | 147669514 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000436908 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACGGCA TCCTGAATAT CAACAAACCT TTCGGGATAA CCTCGTTTGA TGTAGTTGCA AAAGTCAGGC GTATTTATTC CCAAAAAAGG GTAGGGCATG GGGGTACTCT TGACCCGTAT GCAACCGGAG TAATTCCGGT GTTTTTGGGA AAATCTACCC GTCTTATAGA GTATCTGTCT TCCGTCAGCA AGACATATCT GGCTGAAATA GAGCTGGGAG TGGAGACGGA TAGCTATGAC AGCGAAGGCG AAATCACTTT CCGCAAAACC TGTGACTATG TTACCCGTGA AATGATATAT AAAACTTTGA TGGATTTTCA GGGTGAGATA ATCCAAATTC CCCCTATGTA TAGTGCCGTA AAACACCGCG GGATGCGTCT TTACAATCTG GCAAGGCAAG GGATAGAGGT TGAAAGAATT CCCCGGGTAG CCACAATTTA TGGCATTGAA CTGCTTAACT ACACTTCACC GGTACTGCGT GTACGGATAG AATGCGGACA CGGCACATAT ATTCGTTCTC TGGCCTTTGA CTTGGGTAGA AAACTGGGTT GCGGGGCGTA TCTGAAATCT CTGGTAAGAG AGGCATATGG TCAGTTTAAT CTGACAAACT CTCTGGATTT TGCTGACCTT GAGGCCGCAA AATGTGACGG GAAACTGGCA GGTATTCTCC TCCCGCTGGA GACAGCCATA GGGCATCTGC CAAGAGTTTC CCTTGATGAA GAGAATATAA CCCGCTTGGT AAATGGTCTG GAGATAACAC TGGATAGGAT TGACAAACCT GAGGCTGTGG CCGTATACAA TGCTGAAAAC AGTTTCGTTG CTATAATCCA GCCGGAGACT GACGGTACTT GGCATCCGGC TAAAGTCTTC ATAAGACAAA GCCCGAAACC GGATGCAAAT TAG
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Protein sequence | MDGILNINKP FGITSFDVVA KVRRIYSQKR VGHGGTLDPY ATGVIPVFLG KSTRLIEYLS SVSKTYLAEI ELGVETDSYD SEGEITFRKT CDYVTREMIY KTLMDFQGEI IQIPPMYSAV KHRGMRLYNL ARQGIEVERI PRVATIYGIE LLNYTSPVLR VRIECGHGTY IRSLAFDLGR KLGCGAYLKS LVREAYGQFN LTNSLDFADL EAAKCDGKLA GILLPLETAI GHLPRVSLDE ENITRLVNGL EITLDRIDKP EAVAVYNAEN SFVAIIQPET DGTWHPAKVF IRQSPKPDAN
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