Gene DehaBAV1_0872 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDehaBAV1_0872 
SymboltruB 
ID5131770 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDehalococcoides sp. BAV1 
KingdomBacteria 
Replicon accessionNC_009455 
Strand
Start bp861739 
End bp862641 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content46% 
IMG OID640529790 
ProducttRNA pseudouridine synthase B 
Protein accessionYP_001214332 
Protein GI147669514 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0130] Pseudouridine synthase 
TIGRFAM ID[TIGR00431] tRNA pseudouridine 55 synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000436908 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGACGGCA TCCTGAATAT CAACAAACCT TTCGGGATAA CCTCGTTTGA TGTAGTTGCA 
AAAGTCAGGC GTATTTATTC CCAAAAAAGG GTAGGGCATG GGGGTACTCT TGACCCGTAT
GCAACCGGAG TAATTCCGGT GTTTTTGGGA AAATCTACCC GTCTTATAGA GTATCTGTCT
TCCGTCAGCA AGACATATCT GGCTGAAATA GAGCTGGGAG TGGAGACGGA TAGCTATGAC
AGCGAAGGCG AAATCACTTT CCGCAAAACC TGTGACTATG TTACCCGTGA AATGATATAT
AAAACTTTGA TGGATTTTCA GGGTGAGATA ATCCAAATTC CCCCTATGTA TAGTGCCGTA
AAACACCGCG GGATGCGTCT TTACAATCTG GCAAGGCAAG GGATAGAGGT TGAAAGAATT
CCCCGGGTAG CCACAATTTA TGGCATTGAA CTGCTTAACT ACACTTCACC GGTACTGCGT
GTACGGATAG AATGCGGACA CGGCACATAT ATTCGTTCTC TGGCCTTTGA CTTGGGTAGA
AAACTGGGTT GCGGGGCGTA TCTGAAATCT CTGGTAAGAG AGGCATATGG TCAGTTTAAT
CTGACAAACT CTCTGGATTT TGCTGACCTT GAGGCCGCAA AATGTGACGG GAAACTGGCA
GGTATTCTCC TCCCGCTGGA GACAGCCATA GGGCATCTGC CAAGAGTTTC CCTTGATGAA
GAGAATATAA CCCGCTTGGT AAATGGTCTG GAGATAACAC TGGATAGGAT TGACAAACCT
GAGGCTGTGG CCGTATACAA TGCTGAAAAC AGTTTCGTTG CTATAATCCA GCCGGAGACT
GACGGTACTT GGCATCCGGC TAAAGTCTTC ATAAGACAAA GCCCGAAACC GGATGCAAAT
TAG
 
Protein sequence
MDGILNINKP FGITSFDVVA KVRRIYSQKR VGHGGTLDPY ATGVIPVFLG KSTRLIEYLS 
SVSKTYLAEI ELGVETDSYD SEGEITFRKT CDYVTREMIY KTLMDFQGEI IQIPPMYSAV
KHRGMRLYNL ARQGIEVERI PRVATIYGIE LLNYTSPVLR VRIECGHGTY IRSLAFDLGR
KLGCGAYLKS LVREAYGQFN LTNSLDFADL EAAKCDGKLA GILLPLETAI GHLPRVSLDE
ENITRLVNGL EITLDRIDKP EAVAVYNAEN SFVAIIQPET DGTWHPAKVF IRQSPKPDAN