| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0747 |
|---|
| Symbol | |
|---|
| ID | 5132027 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 734871 |
|---|
| End bp | 736121 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640529663 |
|---|
| Product | 3-isopropylmalate dehydratase large subunit |
|---|
| Protein accession | YP_001214209 |
|---|
| Protein GI | 147669391 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0065] 3-isopropylmalate dehydratase large subunit |
|---|
| TIGRFAM ID | [TIGR01343] homoaconitate hydratase family protein
[TIGR02083] 3-isopropylmalate dehydratase, large subunit
[TIGR02086] 3-isopropylmalate dehydratase, large subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTAG TTGAAAAAAT ACTGGCCGCC CACTGCGGCA AAACCCAGGT CAGCCCGGGT
GACTTTATAA ATGCCAAAGT AGACCTGGTA CTGGCTAATG ACATTACCGC ACCTATAGCC
ATTAAAGAAT TTAAAAAGGT TGGAGTCAGC AAGGTATTTG ACTCCAAAAA GATAGTCTTT
GTGCCTGACC ATTTTGTACC CAACAAGGAT ATTGCATCCG CCGAACAGGT TAAAATGGTG
CGTGAATTTG CCCGTGAACA AGGGATACTC TTTTTTGAAT GCGGGAAAAT GGGCGTTGAA
CATGTAATCC TGCATGAGCA GGGTTTGGTA TTGCCGGGTG ATATTGTGGT AGGTGCCGAC
TCCCATACCT GCACTTACGG TGCACTGGGC GCTTTCACTA CCGGCATGGG CTCAACCGAT
ATAGCCGCCG CTATGGCTAC CGGTGAAGTC TGGATGAAAG TTCCCCAAAC TATCAAATTT
AACTATTCGG GCAAACTGCC GAAATGGATT GGCGGCAAAG ACCTTATCCT GTACACCATA
GGGCAGACGG GTGTGGACGG GGCTTTGTAC TCTGCCATGT TTTTCTGCGG TGAGGCTATT
GAAGCGCTCT CTATGGAAAA CCGCTTTACC ATGTCCAATA TGGCTATTGA AGCAGGCGGC
AAGGCCGGGC TGTTCCGGGT TGATGAAAAA ACTCTGGAAT ATGTAACCCC CAGAGCCAAA
CGCCAGTACA CAGTTTATGA CAATGATGCT GATGCGTCAT ATGCTAAAAC ATACAATTTT
GATATTTCCA AGCTTGAGCC ACAGGTATCA CTGCCGCATT CACCGGCAAA TGCCCGCCCT
GTCAGCCAGA TTGGTAAAAT TAAGGTTGAC CAGGTTATCA TCGGTTCCTG TACCAACGGG
AGACTGGAAG ACCTGGCCGT GTCTGCCAAA CTGCTAAAAG GAAATGTGGT TCACCCTGAC
CTGCGGACTA TTGTTATTCC CGGCTCACAG CAGGTATATC TGGATGCCCT GAAGGCAGGC
TATATTGAAA CCTTTATCAA TGCCGGAGTT GCGGTTTCCA CACCCACCTG CGGCCCTTGT
CTGGGTGGAC ATATGGGTAT TTTGGCGGCC GGTGAACGAT GCTTAGCAAC CACCAACCGT
AATTTTGTAG GGCGCATGGG CAGCCCCAAG AGCGAAGTAT ATCTGGCAGG TCCGGCGGTT
GCCGCTGCCA CCGCCATTAA AGGATACATT GCCCACCCTG ATGAAATTTA G
|
|---|
| Protein sequence | MNLVEKILAA HCGKTQVSPG DFINAKVDLV LANDITAPIA IKEFKKVGVS KVFDSKKIVF
VPDHFVPNKD IASAEQVKMV REFAREQGIL FFECGKMGVE HVILHEQGLV LPGDIVVGAD
SHTCTYGALG AFTTGMGSTD IAAAMATGEV WMKVPQTIKF NYSGKLPKWI GGKDLILYTI
GQTGVDGALY SAMFFCGEAI EALSMENRFT MSNMAIEAGG KAGLFRVDEK TLEYVTPRAK
RQYTVYDNDA DASYAKTYNF DISKLEPQVS LPHSPANARP VSQIGKIKVD QVIIGSCTNG
RLEDLAVSAK LLKGNVVHPD LRTIVIPGSQ QVYLDALKAG YIETFINAGV AVSTPTCGPC
LGGHMGILAA GERCLATTNR NFVGRMGSPK SEVYLAGPAV AAATAIKGYI AHPDEI
|
|---|
| |