| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0677 |
|---|
| Symbol | |
|---|
| ID | 5132200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 668208 |
|---|
| End bp | 669608 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640529586 |
|---|
| Product | putative GAF sensor protein |
|---|
| Protein accession | YP_001214139 |
|---|
| Protein GI | 147669321 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0634] Hypoxanthine-guanine phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR01203] hypoxanthine phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000194317 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACAAAG AGCGGGCTTT TTACAAAGCC GTTAGCCGGT CAATCCAAAG TCTAAACACC
CCGGCTGAAC TTAAGGCAAA GCTGGAAGGG ATTATCCGTC TGGCGGCACG GGCCAGTCAT
TGTGCCGTAT CACTACTGCT TATAGATGCG GCAGGACAAA AACTTTCCCA CAATATCTCC
TTCGGTCTGC CCCAGTTTTA TATCCACAAA GGCGTTCTTT CAGCCGCAGA CAGCATAGGA
GAAACGGTAA ACATTCAAAC TACAGCCATA ACCGATGTCC AAAATGACCA CCGTATCCAG
TTCCCGCAGA TGGCTTTAAA AGCCGGATTT TCTTCTATCT TGGGTAGTCC TATTATTTAT
CGGGAAAAAG TTATCGGCAG TATAAGGTTT TACTGCAAAG ATTTTTACGA ATTCAGCCAG
CAGGATATAA CTTTTGCTGA AAATATGGCA CGTATAATCT CTTTGGCCTT TTGTACATTG
CCGACAACCA CAGCACCTGT GGATAACACT GCCTCAATGC CAGCTTCAAA CCTGAAAACC
GCCCAAAATA TCACCTTTGC CCACCAGAGC GAGACTGAAT TTGCCCGTTT ACTGGATTTC
TATAATATAG AGTGGATATA TGAACCCCGT TCTTTCCCGC TGGATTGGGA AGGTGAACTG
GTTACTGAAA TGTTTACCCC TGATTTTTAT CTGCCGGGGT TGGACATGTA TATAGAGTTG
ACCACTTTGA AGCAAAGTCT GGTTACTACC AAAAACCATA AACTCAAAAT GCTAAGAGAG
CTTTACCCTG ATATAAAAAT AAGCCTGTTA TATAAAAATG ATTATGCACG TCTGTTATCC
AAGTACGGGT GCGGCCCACT GGCTCAGACC AGAGCTCACG GCATAGACAG GGTGCTTTAT
ACCGCCGGGG ATATCGCCGA GAGAGTGGCC AGCTTGGCAC GCCAAATATC TGATGATTAC
CCGGATAACC GCCCCATACT TATCGGGGTG CAAAGGGGAT TTATCTGCTT TATGGCAGAC
CTAATACGCC AGATAGCTAT TCCGCTGGAT ATAGATTTCA TGACCATATC CTATTACAGC
GGCAGCAATG CATCTATGGT ACGCATCACC AAGGACATGG ATCTGGAGGT AGCTGGCAGA
GATGTGCTGC TTGTTGAAGA CATTGTGGAT ACAGGCATAA CCCTGAACTA TCTGTTAAAC
CATCTCAGGT CTAAAAATCC TGCCAGCCTC AAGGTTTGCA CCCTTCTTGA CCGCAAGGTA
AGACGACTTA TTGACATAAA TATTGACTAT GTAGGTTTTG AACTGCCGGA TGAATTTGTG
GTAGGGTATG GGCTGGATTA CCATGAGGAA TACCGGAATC TTCCGTTTAT AGGCATACCC
GGTATAAAAC AGAACCCCTG A
|
|---|
| Protein sequence | MNKERAFYKA VSRSIQSLNT PAELKAKLEG IIRLAARASH CAVSLLLIDA AGQKLSHNIS
FGLPQFYIHK GVLSAADSIG ETVNIQTTAI TDVQNDHRIQ FPQMALKAGF SSILGSPIIY
REKVIGSIRF YCKDFYEFSQ QDITFAENMA RIISLAFCTL PTTTAPVDNT ASMPASNLKT
AQNITFAHQS ETEFARLLDF YNIEWIYEPR SFPLDWEGEL VTEMFTPDFY LPGLDMYIEL
TTLKQSLVTT KNHKLKMLRE LYPDIKISLL YKNDYARLLS KYGCGPLAQT RAHGIDRVLY
TAGDIAERVA SLARQISDDY PDNRPILIGV QRGFICFMAD LIRQIAIPLD IDFMTISYYS
GSNASMVRIT KDMDLEVAGR DVLLVEDIVD TGITLNYLLN HLRSKNPASL KVCTLLDRKV
RRLIDINIDY VGFELPDEFV VGYGLDYHEE YRNLPFIGIP GIKQNP
|
|---|
| |