| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0675 |
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| Symbol | |
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| ID | 5131286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | - |
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| Start bp | 665082 |
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| End bp | 666983 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640529583 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001214137 |
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| Protein GI | 147669319 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAAAAC TGCTAGACAC AATAAATAGT CCCTCAGACC TGAAAAAGCT TTCTCTGGAC
GAACTAAGAG AGCTGGCTGT CCAAATCCGC GAAGAGCTCG TTAACCGAGT GACTTTAAAC
GGGGGACATT TAGCCTCAAG CTTAGGCGTC GTTGAGCTTA CGATTGCGTT GCATCGCGTT
TTTGAAAGCC CCAAAGATAA AATAATCTGG GATGTGGGAC ATCAGTCTTA TGCCCACAAG
CTTTTAACCG GCCGCCGCGA ACAATTTGCC ACGCTTCGCC AGCATGGCGG ATTATCGGGT
TTTACCTGCC GTGATGAAAG CCCGCACGAC CCGTTCGGGG CAGGCCACGC CAGCACCTCC
ATCTCAGCCG GACTGGGCAT GGCTGTAGCC CGTGATTTGG CCAAAGAAGA TTACAGCGTT
ATTTCAGTAA TCGGAGACGG AGCCATTTCC GGCGGCATGT CTTTTGAGGC TATCAATAAT
GCCGGACATT TACACACCAA GTTTATAGTT ATTCTTAATG ACAACGGCAT GGCCATATCT
CCTTCTACCG GGGCTTTATC CAAGTTTTTA AATAATGTCC GCTTTGATCC GCGTTTTGAA
TTTGCCAAAC GGAATGCCAA GCAAACCATA ACTAATATGC CTTTCGGCAA AGCTGTTTGG
GCTTTTACTA AAAGCATTAA ACGCAAATTT GAAAAATCCA TGCTACCTGG CAGTCTCTGG
GAAGAATTGG GCTTTATTTA CCTGGGGCCG GTGGATGGGC ATAATATACG CGAACTTGAG
GCGGCACTTA AACGCGCCAA AGACTTTGAA TCCAAGCCGG TACTTATCCA TATGATTACA
AAAAAGGGCA AAGGCTACGA TGATGCTGAA GCTGACGCTG TAAAATATCA CGGAATCTCG
CCCAAATCCG GCGGATTGAA GAGTAGTCAT GGGCTTTCCT ATAGCCAGGT ATTCGGTCAA
ACTTTACATA AAATTATGTC CCAAAACCCG CAGGTAGTAG CCATAACTGC CGCCATGACA
GATGGCTGCG GGCTGGGTGA AATTGCCGCA GCTTTCCCTG ACAGGGTATT TGATGTGGGC
ATTTGCGAAC AGCATGCCGT CACTTTTGCA GCCGGAATGG CTACCCAGGG TTATATACCC
GTAGTAGTTA TTTATTCTAC TTTCCTCCAG CGCGGTTTTG ACCAGATAAT CCATGACGTC
TGTTTGCAAA AACTGCCGGT AGTATTTGCG ATTGATAGGG GAGGCATTGT AGGAGATGAC
GGTAAAACCC ATCAGGGTAT TTTTGACCTG TCCTTCATGT CTTTGATACC TGATATGGTT
GTATCCGCAC CATCTGATGA AAATGACCTG CAACACCTGC TTTATACCGC TGTCAATTCG
GGTAAACCTT TTGCTCTTCG CTATCCCAGA GGATTTGGCG AAGGGGTTGA AATAGAAAGT
AGTTTACATA ATATACCAAT AGGTCAAAAT GAAATCCTGG TCAATGGCAG TGACGTAGCT
ATTTTAGCCA CCGGTAAAAG TGTAGCTTTT GCCAGAGAAG CCCTGGAAAT ACTGACCGAA
AGCGGTATTA AACCCACTTT AGTAAATAAC CGCTATATCA GCCCACTGGA CAGCGAACTT
GTTTTAAAAA TAGCCCAAAG CCATAAGTAC CTCGTTACAG TTGAGGAAAA CGTAATCTCC
GGAGGCTTGG GGAGCCGAAT AAACACTCTC CTTGCTGAAG CCGGATTGGT GAATAAAATC
AAGATTGCCA ATATTGGCAT ACCGGATAAA TTTGTTGAAC ACGGTAACCA AAGCCTGCTT
CGTGCCAAAT ACGGATTGGA CGGAAAAGGT ATAGCCCAAA GAGTATTATC TCTGGTAGGC
AATCCCAATG AAATGAAACA CCCTCAAATA ATTTGCCCAT AG
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| Protein sequence | MSKLLDTINS PSDLKKLSLD ELRELAVQIR EELVNRVTLN GGHLASSLGV VELTIALHRV
FESPKDKIIW DVGHQSYAHK LLTGRREQFA TLRQHGGLSG FTCRDESPHD PFGAGHASTS
ISAGLGMAVA RDLAKEDYSV ISVIGDGAIS GGMSFEAINN AGHLHTKFIV ILNDNGMAIS
PSTGALSKFL NNVRFDPRFE FAKRNAKQTI TNMPFGKAVW AFTKSIKRKF EKSMLPGSLW
EELGFIYLGP VDGHNIRELE AALKRAKDFE SKPVLIHMIT KKGKGYDDAE ADAVKYHGIS
PKSGGLKSSH GLSYSQVFGQ TLHKIMSQNP QVVAITAAMT DGCGLGEIAA AFPDRVFDVG
ICEQHAVTFA AGMATQGYIP VVVIYSTFLQ RGFDQIIHDV CLQKLPVVFA IDRGGIVGDD
GKTHQGIFDL SFMSLIPDMV VSAPSDENDL QHLLYTAVNS GKPFALRYPR GFGEGVEIES
SLHNIPIGQN EILVNGSDVA ILATGKSVAF AREALEILTE SGIKPTLVNN RYISPLDSEL
VLKIAQSHKY LVTVEENVIS GGLGSRINTL LAEAGLVNKI KIANIGIPDK FVEHGNQSLL
RAKYGLDGKG IAQRVLSLVG NPNEMKHPQI ICP
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