| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0579 |
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| Symbol | |
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| ID | 5131307 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | + |
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| Start bp | 567403 |
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| End bp | 571176 |
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| Gene Length | 3774 bp |
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| Protein Length | 1257 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640529482 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | YP_001214042 |
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| Protein GI | 147669224 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAACCGG AGCGGGATGG TTTATTCTGT GAGCGCATTT TTGGCCCTAT CAAGGACTTT
GAGTGTGCCT GCGGCAAGTA CAAACGTATC CGCTACAAGG GTATTATCTG TGACAAGTGC
GGCGTGGAGA TTGCCCGTGC CAAGGTACGG CGTGAACGGA TGGGGCATAT TGAATTGGCT
TGTCCGGTAG GCCATATCTG GTTTACCCGC GGCATTCCCA GCCGGGTTGG CTTGCTGCTT
AACCTTTCTA CCCGCAGTCT TGAAAGGATA ATTTATTATT CGCATTTCAT TATCACTGCG
GTAAATGATG AAGCCCGTGC AAAGGCTATT AAAGACCTTG AGGTTATCTC ATCCCAGAGG
GTAGCAGACA AGGGCAGTGA AGTAGATACT CGGGTAGCCC AAATGGAAGC TGAAGATGCT
ACTGTTGAAG CTATAAACCA GATTCGCCGT GACTTCTCAA CCGAACGAGA GCAAATGGAA
GAAGATATCC AGTTGCTTAT AGACCAGCTG AAAGATCTGC AAAAGGGCAA TCTGCTGACC
GAAAACCAGT ATTACGAACT GAAACAACGT TTCAGCAATG TTTTTGAGGC ATCTATGGGT
GCTGAAGCCC TGCTGAAACT ACTTTCATAT ATTGATATGG ACAAGGAACG GAGCAAACTT
ATTCAGGAAA CCCGCTCCAC TTCCGGCCAG CGCCGCAAAA AGGCCGGCAA ACAACTCCAG
CTGGTAGAAG CCTTCCGCCG TTCCAGCAAC AAACCTGAAT GGATGATAAT GACTGTTCTG
CCGGTACTGC CGCCAGACCT TCGTCCCATG GTTCAGCTTG ATGGCGGCCG TTTTGCCACC
AGTGACCTGA ATGACCTTTA CAGAAGGGTT ATTAATCGTA ACAACCGTCT CCAGCACCTG
ATGGAAATCG GGGCGCCGGA GATTATTATC CGCAACGAAA AGCGTATGCT TCAGGAAGCG
GTAGATTCGC TTATTGATAA CGGACGCCGA GGCAAGAGTG TAGCTGTAAA TGGTGACCAC
AAGGCCAAAT CCCTTTCCGA CCTGCTTCGC GGCAAACAGG GACGCTTCCG CCAGAACCTG
CTGGGTAAAC GGGTTGATTA CTCTGGTCGT TCTGTTATCG TGGTAGGGCC TTCGCTCAAG
CTTTCACAGT GCGGTTTGCC CCGCCGTATG GCGCTGGAGC TGTTTAAGCC CTTTGTCATG
CACCGTCTGG TACGGGATGG GTTAGCCCCC AATATCAAGA GTGCCCGCCG TTTGGTAGAG
CGTGCCCGCC CGGAGGTTTA TGATATTTTG GAAGAGGTAG TCAAGGACAG GCCGGTTCTG
TTGAACCGCG CTCCTACTTT GCATCGCCTT AGTATCCAGG CCTTTGAACC GGTACTTATA
GACGGCAGCG CCCTCAGGCT TCACCCGCTG GTCTGTTCAG CCTTTAATGC TGACTTTGAC
GGTGACCAGA TGGCTGTCCA CGTGCCTCTT TCCAAAGCGG CCGTGAAGGA AGCCCGGGAA
ACCATGCTTT CTATTCATAA TATGATGCTT CCCTCCAGTG GTGAACCGGT AGTATCTCCC
AGCCTTGACA TGGTCTTTGG CTGTTACTAC CTGACCACCA CTCGTCCGGG TGCCAAGGGT
GAGGGTAAAA TATTCGGTGA CTTTGAAGAA GCCAAACGTT ATTATGAAAT GGGCATCATT
GACCTGCGGG CTATTATCAA AGTCCGGGAC GGCAAGGGTA ATATGCTGGA AACCACTACC
GGGCGGATTA TCTTTAATGA TGTCCTGCCC AAGGCTGTAG AGTTCCAGAA TATGGATATA
CCCAAATCCG CCATTAAAAA GATTATCGGA CGCTGTTACA AGATACTTTC CAGCCAGGAT
ATGGCTGTCA TGCTGGACAA GATAAAAGAA CTGGGTTTCA AATTTGCTAC CAGTTCCGGT
ATTTCCATCG CCATGAGTGA TATTTCAGTA CCGCGTGAAA AAACCAAGCT GGTAGCCGCC
GCTGATGAGC GGACTGCCAT TGCCGAAGGT CAGTTTGCCC GCGGCCTTAT CACCGAGGAC
GAACGCTACA ACAGTATTAT TGAAACATGG ATGGAAACTA CTGACCGCAT TACTGATGCT
ATTCAGGCGG GCTTTGACAA ACAGGGCTCT GTTTACATGA TGGCTAACTC TGGTGCCAAG
GGTAATATTT CCCAGATACG CCAGATGGCT GGTCTGCGCG GTCTTATGAC TAACCCTTCC
GGCCGTATCA TTGACTTCCC CATCAAGTCT TCCCTGCGTG AAGGTTTGAC AGCCCTGGAG
TACTTCATAT CCACCCATGG TGCCCGTAAG GGTTTGGCGG ATACCGCTTT GCGTACTTCC
GGTTCAGGTT ACCTGACTCG CCGCCTTATA GACGTAACTC AGGATGTTAT TATTCTTCAG
GAAGACTGCG GCACTGCAAA CGGCACCTGG ATTATAGAAC CCAAAGAAAA GGGTATGTTG
CCGCCGCTGG TTGACCGCAT ACTTGGCCGC TGGACGGCTC ATAATGTGGT TCACCCCCAG
ACTGGCGAAA TTATCGTGGA TAACAATGAA GAGATTGATG AAATCAAGGC TAAGGCTATC
GGCGAAGCCG GTATTACCGA GGTATTTGTA CGCTCTCCTC TTACCTGTGA GTCCACTCAC
GGCATGTGCC GCCGCTGCTA CGGGCGTGAT CTTGGTCGTG TTCGTCTGGT AGATATGAAT
ACCGCAGTCG GTATTATTGC CGCCCAGAGT ATCGGTGAAC CCGGTACCCA GCTGACACTT
CGTACCTTCC ACACCGGCGG TGTGGTAGGC GTAGATATCA CTACCGGTCT TCCCAGAGTT
GAAGAACTTT TTGAGGCCCG TCCGCCCAAA GTTCAGTCTA TTATCTCCGA GATAGACGGT
GTGGTAGAGG TTATTGAAAA TGAAAACGGC CGCCATATCC GCATAGCCTC AGATGAAGTC
TATCAGGATG AATACGAATT GCCTTCCGGT TGGAAAACTC AGGTTCAAAG CAGACAGTGG
GTAGATTCCG GTATGGTATT GGCTTCACCT GAACTGGAAG GTAAATCCAA GGCAGTTGTT
CAGAGTGACC AGAATGTGGT TGCCAGAGTG GCCGGTGAAG TTACCATAGA GGGTAATCTT
ATTACCATCA AGTACAGCGA AAGCGAAGAA CGGGAATACA CCATACCTGC CGCTATGCAG
ATAAAGGTTA AAACCGGGGA TACCATCCGT GCTGGACAAC AGCTGACTGA CGGCTCAATA
AACCCGCAGG ATATTCTGTC CATTTTGGGC AGAGATGCTG TTCAGAAATA TCTGGTTGAA
GAAGTCCAGA AGGTTTACTA CTCTCAGGGT GTACATATTA ACGATAAGCA CATAGAGGTT
ATTGCCCGAC AGATGCTTAT CAAGGTACGT ATTGATTCTT CCGGTGATAC AGACCTTGTT
CCGGGTGAAC TGGTAGACAA GTTCCGCTAC GAGGATATCA ATGCCAAGGT TCTGGCCGAA
GGCGGCGAAC CGGCAACTGC TCACACCGTA CTTATGGGCA TTACCCGTGC CTCCCTTAGC
ACTGAAAGCT GGCTGGCTGC GGCTTCCTTC CAGGAAACCA CCCGCGTGCT TACTGATGCC
GCTATTTACG GCAGAGTAGA CAAGCTATCC GGCCTGAAGG AAAATGTTAT TATTGGTAAG
CTTATCCCTG CCCAGTGCAA GTCCTGCAAG GAAGCTACTA TTGAAAGGGC TGAACGGATA
GCTGCGGCCG CTTCTGCACC TGCCATGAGC GGTCTGCCGG AGAATTGCCT CTAG
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| Protein sequence | MKPERDGLFC ERIFGPIKDF ECACGKYKRI RYKGIICDKC GVEIARAKVR RERMGHIELA
CPVGHIWFTR GIPSRVGLLL NLSTRSLERI IYYSHFIITA VNDEARAKAI KDLEVISSQR
VADKGSEVDT RVAQMEAEDA TVEAINQIRR DFSTEREQME EDIQLLIDQL KDLQKGNLLT
ENQYYELKQR FSNVFEASMG AEALLKLLSY IDMDKERSKL IQETRSTSGQ RRKKAGKQLQ
LVEAFRRSSN KPEWMIMTVL PVLPPDLRPM VQLDGGRFAT SDLNDLYRRV INRNNRLQHL
MEIGAPEIII RNEKRMLQEA VDSLIDNGRR GKSVAVNGDH KAKSLSDLLR GKQGRFRQNL
LGKRVDYSGR SVIVVGPSLK LSQCGLPRRM ALELFKPFVM HRLVRDGLAP NIKSARRLVE
RARPEVYDIL EEVVKDRPVL LNRAPTLHRL SIQAFEPVLI DGSALRLHPL VCSAFNADFD
GDQMAVHVPL SKAAVKEARE TMLSIHNMML PSSGEPVVSP SLDMVFGCYY LTTTRPGAKG
EGKIFGDFEE AKRYYEMGII DLRAIIKVRD GKGNMLETTT GRIIFNDVLP KAVEFQNMDI
PKSAIKKIIG RCYKILSSQD MAVMLDKIKE LGFKFATSSG ISIAMSDISV PREKTKLVAA
ADERTAIAEG QFARGLITED ERYNSIIETW METTDRITDA IQAGFDKQGS VYMMANSGAK
GNISQIRQMA GLRGLMTNPS GRIIDFPIKS SLREGLTALE YFISTHGARK GLADTALRTS
GSGYLTRRLI DVTQDVIILQ EDCGTANGTW IIEPKEKGML PPLVDRILGR WTAHNVVHPQ
TGEIIVDNNE EIDEIKAKAI GEAGITEVFV RSPLTCESTH GMCRRCYGRD LGRVRLVDMN
TAVGIIAAQS IGEPGTQLTL RTFHTGGVVG VDITTGLPRV EELFEARPPK VQSIISEIDG
VVEVIENENG RHIRIASDEV YQDEYELPSG WKTQVQSRQW VDSGMVLASP ELEGKSKAVV
QSDQNVVARV AGEVTIEGNL ITIKYSESEE REYTIPAAMQ IKVKTGDTIR AGQQLTDGSI
NPQDILSILG RDAVQKYLVE EVQKVYYSQG VHINDKHIEV IARQMLIKVR IDSSGDTDLV
PGELVDKFRY EDINAKVLAE GGEPATAHTV LMGITRASLS TESWLAAASF QETTRVLTDA
AIYGRVDKLS GLKENVIIGK LIPAQCKSCK EATIERAERI AAAASAPAMS GLPENCL
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