| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0571 |
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| Symbol | |
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| ID | 5131949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | - |
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| Start bp | 553991 |
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| End bp | 556033 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640529474 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_001214034 |
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| Protein GI | 147669216 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.135698 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGATA TGTTTTCCCC CTTGATTGAA GTAGAAAACC TAAGGCGTGA AATAAACCGC
CATAACCAGC TATATTACGT TCAGGATAAT CCTGAAATCT CTGATGCTCA GTATGACACT
TTGATCCGCC GCCTGAAAGA ACTGGAGGAA GCCCACCCCG AACTGGTTAC CCCGGACTCA
CCCACCCAAA GAGTCGGGGC AGAGCCGCTT AAAGCTTTCG GGATTGTAAA CCACCCTTAT
CCGTTACTTT CTCTGGCAAA TGCTTTTTCA GATACAGAAC TGGAAGCTTG GTACCAGCGG
GTAAAGAAAC TGCTGGGCAA TATTCCTTTT CAGATAGACT GCGAGCCCAA AATGGACGGC
CTGGCGGTAG CCCTTACCTA CCGGAACGGA AAATTTGCAA CCGGTGCTAC CCGGGGTGAC
GGATTTCAGG GTGAAAATAT TACCCGAAAC CTGCGGACTA TCCATTCCAT ACCTTTAAAC
GCCGAACCAA ACGCACCCCC TGTTTTTGAA GTAAGGGGTG AAGTATATCT TTCCAAAAAT
GGCTTTGCCA AACTCAACCG CGAAAGGGCG GATAAAGGGC TGCCCCTTTT TGCCAACCCA
CGCAATGCCG CCGCCGGTTC ACTCCGCCAG CTTGACCCGT CAGTTACGGC CGAAAGACCG
CTGGATATAT TTATTTATGC TTTAGGATAT TCAGAAGACA GCCTGCTGCC TGACAGCCAC
TGGCAAATAC TGGATTATTT CAGCAAAATT GGCTTTAGGA TAAATCCACT TAACCGCTTG
GTAAACACCC TGGAAGAAGC CAAAGAATAT TACCGCCAGA TGGCAGCAAA CCGGGCTTCA
CTGCCTTATG AAGCAGACGG AGTAGTTTTC AAGGTGGACT CCGTCTCTCT GCAACACCGG
CTGGGGGACG TAGGTCGTGA ACCCCGCTGG GCCATAGCCT ATAAATTCCC GGCTGAACAG
GTCATGACCC GCCTGAAGAA AATAGGCATA TCTGTAGGCC GTACAGGTAC ATTAAACCCC
TTTGCCGTAC TTGAGCCGGT AAATGTGGGC GGAGTAGTGG TAAAACAGGC CGCCCTGCAT
AATGAAGATG ATATACTCCG CAAAGATATC CGCGAAGGAG ATACGGTCAT TATCCAGCGG
GCAGGTGAAG TAATACCTGA GGTAGTTGCA CCGGTACTGA GTAAACGCAA CCCCGAATCA
AAACCCTTCA GAATGGAAGA ATCTCTGTTT AACCCGAACC TTAACCGCAC TGCCTGCCCG
GTGTGCGGCG GGGAAATATA CCGCCCCGCA GGCGAAGCTA TGCACTACTG TGCCAACGTT
TCCTGCCCCG CTCAGTTTGA ACGCCAGCTT GAACATTTTG TTTCCAGAGG GGCTATGGAT
ATACGCGGTA TCGGCGAAAG CCTAAGCGTA ATACTGGCAC AGCAGGGGCT GGTGAAAAAC
GTATCGGACC TGTACTACCT GACCACCGCT GATTTACTGC AACTGCCGCG TATGGGTGAA
AAAAGTGCGG ATAATATAAT AGACGCCATT GCAGACAGTA AAACCCGCCC GCTGGATAGG
GTAATATTCG GTCTGGGTGT ACGCCACGTG GGCAACGAGA CCGCCACCCT GCTCTCAAGA
CACTACGGGA ATATATGGGC ACTGGCTAAA ACCGGTCTTG GTGAACTGCA AACTATACCT
GATATCGGTG ACAAAATAGC CAGCAGTATC GTAGCGTATT TCAGCGAAGA AAAAAATGTG
GCTGTTATCC GCCGTCTGGA AGAAGCAGGC GTACGGCTTA CTTCAGACCA GAAACCGGTA
AACAAAAATA TGCCATTTTC CGGCATGGAG TTTGTAGTCA CCGGCAAGCT GGAAAGTTTC
AGCCGCGAAG AAGCACAGGA AAAAATCCGC TCACTCGGCG GTACAGCCAA GGATAACGTC
ACCAAAGCAA CCAACTATTT GGTAGTGGGT GCAGATGCCG GCTCCAAGCT GACCAAAGCC
CGAAGTATGG GTGTAAAAGA GCTTTCCGAA CGGGAATTTA TAAATATGCT GGAGCAATCT
TGA
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| Protein sequence | MEDMFSPLIE VENLRREINR HNQLYYVQDN PEISDAQYDT LIRRLKELEE AHPELVTPDS
PTQRVGAEPL KAFGIVNHPY PLLSLANAFS DTELEAWYQR VKKLLGNIPF QIDCEPKMDG
LAVALTYRNG KFATGATRGD GFQGENITRN LRTIHSIPLN AEPNAPPVFE VRGEVYLSKN
GFAKLNRERA DKGLPLFANP RNAAAGSLRQ LDPSVTAERP LDIFIYALGY SEDSLLPDSH
WQILDYFSKI GFRINPLNRL VNTLEEAKEY YRQMAANRAS LPYEADGVVF KVDSVSLQHR
LGDVGREPRW AIAYKFPAEQ VMTRLKKIGI SVGRTGTLNP FAVLEPVNVG GVVVKQAALH
NEDDILRKDI REGDTVIIQR AGEVIPEVVA PVLSKRNPES KPFRMEESLF NPNLNRTACP
VCGGEIYRPA GEAMHYCANV SCPAQFERQL EHFVSRGAMD IRGIGESLSV ILAQQGLVKN
VSDLYYLTTA DLLQLPRMGE KSADNIIDAI ADSKTRPLDR VIFGLGVRHV GNETATLLSR
HYGNIWALAK TGLGELQTIP DIGDKIASSI VAYFSEEKNV AVIRRLEEAG VRLTSDQKPV
NKNMPFSGME FVVTGKLESF SREEAQEKIR SLGGTAKDNV TKATNYLVVG ADAGSKLTKA
RSMGVKELSE REFINMLEQS
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