| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0553 |
|---|
| Symbol | |
|---|
| ID | 5131730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 540415 |
|---|
| End bp | 541176 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640529456 |
|---|
| Product | DNA repair protein RecO |
|---|
| Protein accession | YP_001214016 |
|---|
| Protein GI | 147669198 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1381] Recombinational DNA repair protein (RecF pathway) |
|---|
| TIGRFAM ID | [TIGR00613] DNA repair protein RecO |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAC CCCATGACTT TAAAACCAAA GCCATAATAG TCCGTAAAAC AAAATGCGGT
GAAGCTGACC GTATTTTAAG CTTGCTTACT CCGGATCTGG GGTTGATACA GGGCTTTGCC
AAGAGCGTCA GAAAGACCAC GAGCAAACTT TCAGGCCATC TGGAGCTTTT ATGCTACTCA
GAGGTATCGC TTGCCAGAGG CAAAGCTATA GATACGATAA CCGGCAGCCA GACTATCCAG
AGTTTTCTTA ATATCCGCAA CAGCCTTCAA CTATCCGCCA TGGCTTTTTA TGCCTGTGAG
CTGGCTTACC ATTTCTCGCC GGAGGAAGCT GCCAACCCAG CCTTGTTTCA GCTCTTGCTC
TCCACTCTGG AGGAACTGGA TAATGGCTCT CAGCCTGAAT TGTGTTTAAA ATATTTTGAA
ATAAACCTTC TGGCAAGTAG TGGCTACAAA CCGGAACTCC GCGAATGTGC CAATTGCCAT
AAAAAACTGC AGGCGACCAT AAATTACTAC AGCCCGGAAA GCGGCGGGGT AATTTGCCCG
AACTGCCGAA ACACCCAAAT CGGTATGCCG GTTTCGGTAA ATACGGTGAA AGTATTGCGT
TATATACAGG AAAACAGCTT CTCCAGTATC TGCCGCCTGA AGATTAACCG GGAGATATTG
TCGGAACTGG AGCTAGCAAT ACGTGCCAAT ATCCGCTTTG TGTTGGAAAA AGAGCCCAAA
GCCCTTTTCT GGCTGGATAG CCTCCGCTTG GCTGATTTAT GA
|
|---|
| Protein sequence | MTKPHDFKTK AIIVRKTKCG EADRILSLLT PDLGLIQGFA KSVRKTTSKL SGHLELLCYS
EVSLARGKAI DTITGSQTIQ SFLNIRNSLQ LSAMAFYACE LAYHFSPEEA ANPALFQLLL
STLEELDNGS QPELCLKYFE INLLASSGYK PELRECANCH KKLQATINYY SPESGGVICP
NCRNTQIGMP VSVNTVKVLR YIQENSFSSI CRLKINREIL SELELAIRAN IRFVLEKEPK
ALFWLDSLRL ADL
|
|---|
| |