| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0540 |
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| Symbol | |
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| ID | 5131574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dehalococcoides sp. BAV1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009455 |
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| Strand | - |
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| Start bp | 528463 |
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| End bp | 528963 |
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| Gene Length | 501 bp |
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| Protein Length | 166 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640529442 |
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| Product | 16S rRNA processing protein RimM |
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| Protein accession | YP_001214003 |
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| Protein GI | 147669185 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000769846 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTCAAG AAGAATATAT TTTAATAGGT AAAGTGCTGG GAGTATGGGG AATAAGTGGC
GGCCTCAAGA TTGGGGTGCT GACGGATTTC CCCGAACGCT TTGATGCCGG GAATGAACTG
CTGGTAGGAC GCAAGCTGTA TACCATCAGC CAGACTAACT GGCAAAAAGC CCAGGTTATT
GTTCATTTGA GCGGAATAGA CGATATTGAT ACCGCTCTGG AACTCAAGGA CGCTCTGGTG
GAAATACCTG CCTCCGCTTT GAAGGAACTG CCTGAGGGCG TTTACTATGA CTTTCAGTTG
ATAGGGCTGG AAGTGGTGGA TCTGTCAGGA GTTAAGATTG GGCAGATAAA AGAAATACTG
CATATGCCCT CTAACGATAT ATACGTAAGC AGTTACGGTG TTAAAGAAGC CTTGATACCA
GCAATCAAGG ACGTAGTAAA AGAAATAAAC CTGAAAACCG GTAAAATAAT TATTGACCCC
ATTCCCGGTT TACTTGATTA G
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| Protein sequence | MTQEEYILIG KVLGVWGISG GLKIGVLTDF PERFDAGNEL LVGRKLYTIS QTNWQKAQVI
VHLSGIDDID TALELKDALV EIPASALKEL PEGVYYDFQL IGLEVVDLSG VKIGQIKEIL
HMPSNDIYVS SYGVKEALIP AIKDVVKEIN LKTGKIIIDP IPGLLD
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