| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0515 |
|---|
| Symbol | |
|---|
| ID | 5131774 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 500606 |
|---|
| End bp | 501316 |
|---|
| Gene Length | 711 bp |
|---|
| Protein Length | 236 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640529417 |
|---|
| Product | primosome, DnaD subunit |
|---|
| Protein accession | YP_001213978 |
|---|
| Protein GI | 147669160 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3935] Putative primosome component and related proteins |
|---|
| TIGRFAM ID | [TIGR01446] DnaD and phage-associated domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAACC CGCCGCCCGT CCCTGTCAGA CAGGAGTTTA CTCCCGTATC CCGTTATTTT
ATCCACCGGG TAGCGCCGTT GATTGCAGAC CCGGCAGAAC TTAAGGTAAG TCTAGCGGTA
TTCAGCCTTG TTCAGGCCAA AAAGGGCTAT CCCAGATACA CCACTCTGGC TGAACTGGGG
GCAGAAGAAA CCCTGATGAA CGCTTTGGGC AAAACCCCAA ACGAAAGCTT GCAATCACTG
GAGAAAGCCC TCAAAATGGC GGTGGAACGG AGAACCCTGC TGGGGCTGGA ACTGAAAAGC
GGAAAACACA ACCACCAGCT TTATTTTATT AATACTGAAA CTGATACAGC CGTAGTGGAA
AAGATAAAAA ATGGTAGTCT GGCTTTACCC GGTTTAAAAG AAGTAACAGC AGAAGTAATA
ACCGGCAAAA CCGGACAACC CAATATATTT AAACTTTACG AACAGAATAT AGGTTTGCTG
ACCCCCATGC TGGCAGACAA TCTGAAAGAA GCTGAAAAGC TGTATCCCGA AGAATGGATT
GCCGAAGCCA TAAAAGAGGC TGTCAGCCTG AATAAACACA ACTGGCGCTA TATAGAACGA
ATACTGGAAA ATTGGTCAAG TCAGGGAAAA AACAGTGGAA CACATAAAGG AAATACTGGG
GAAACAGATA AATACAAGGG CCAATTGTAC GACCACCTCG TCCAAAGATA A
|
|---|
| Protein sequence | MSNPPPVPVR QEFTPVSRYF IHRVAPLIAD PAELKVSLAV FSLVQAKKGY PRYTTLAELG
AEETLMNALG KTPNESLQSL EKALKMAVER RTLLGLELKS GKHNHQLYFI NTETDTAVVE
KIKNGSLALP GLKEVTAEVI TGKTGQPNIF KLYEQNIGLL TPMLADNLKE AEKLYPEEWI
AEAIKEAVSL NKHNWRYIER ILENWSSQGK NSGTHKGNTG ETDKYKGQLY DHLVQR
|
|---|
| |