| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0479 |
|---|
| Symbol | |
|---|
| ID | 5131834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | + |
|---|
| Start bp | 466946 |
|---|
| End bp | 467938 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640529381 |
|---|
| Product | DNA-directed RNA polymerase subunit alpha |
|---|
| Protein accession | YP_001213942 |
|---|
| Protein GI | 147669124 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
|---|
| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000042401 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCTGATC TAGCTATACC CACAATTAGT TGCACCGAGA GCGACGGCAA GTACGGACGC
TTTGTGGTAG AGCCTTTGGA AAAAGGTTTT GGGACTACTA TGGGTAATTC ACTTCGACGT
ATACTTCTTA GCTATCTGGA CGGGGTTGCT ATTACCCGTG TCCGGATAGA TGGTATCCAG
CATGAGTTTT GTGCTCTGCC CAAGGCCAAA GAAGATACAC TTGATTTTTT ATTGAACCTT
AAAAATATAA GGGTTGAGAG CCTTTCAGGA CTTGAGGGTA TTTTGTACCT GAGAGCTTCC
GGCTCCAAGG TGGTTACGGC AGCAGATATT GAACCCTCAA ATGATTTTGA GGTAGTAAAT
CCTGAGCTAT ATCTGCTTAC CCTTGATTCA GATGATGCTG TTTTGAATGT GGAACTTGAA
GTAGAGCTTG GCCGGGGCTA TCGTCCTCCG GAAAGCGCCG AGAATACGCC TATAGGCACT
ATTCCGGTAG ATGCCATCTT CACCCCCATT CGCAAGGTGA ACTTTACCAC CGAGCCTATG
CATGTAGGCC GTGAAACCAG TCTTGAACGT TTGGTGCTTG AGGTATGGAC TGACGGTACA
GTAGAACCTG CCACCGCAGT CAGCCGCTCA GCTGATATTC TGGTGAAACA GTTTGCGTCT
CTGGTTAGCC ACAGCAAGGT AGTGGCTGAA ATAGAAGCCA GCGAGCCGGT TAAATATACT
ATACCGGAAG AAAAATATAA CATGCCTATT GAACAGTTGG ATCTGTCTGT CAGGGCAGTA
AATTGCCTGC GTCATGCCGG CATAACTACC GTAGGCGAGG TCATAAACAG GGGAACCAAG
GAACTGCTTA CTTTGCGCAA CTTTGGCCTT AAGTCTCTGA CGGAGCTTGA GGACAGACTA
AAGACCATTG GTTTGTCCCT GAACCCTGAA GATGAGTTGT TTGAAGAAGC TGAAAACAAT
AAGAAGAAAA ACAAGGGCAT AGACGAAGAC TAA
|
|---|
| Protein sequence | MSDLAIPTIS CTESDGKYGR FVVEPLEKGF GTTMGNSLRR ILLSYLDGVA ITRVRIDGIQ
HEFCALPKAK EDTLDFLLNL KNIRVESLSG LEGILYLRAS GSKVVTAADI EPSNDFEVVN
PELYLLTLDS DDAVLNVELE VELGRGYRPP ESAENTPIGT IPVDAIFTPI RKVNFTTEPM
HVGRETSLER LVLEVWTDGT VEPATAVSRS ADILVKQFAS LVSHSKVVAE IEASEPVKYT
IPEEKYNMPI EQLDLSVRAV NCLRHAGITT VGEVINRGTK ELLTLRNFGL KSLTELEDRL
KTIGLSLNPE DELFEEAENN KKKNKGIDED
|
|---|
| |