Gene DehaBAV1_0466 details

Gene Information

• Locus tag: DehaBAV1_0466
• Symbol: rplF
• ID: 5131159
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides sp. BAV1
• Kingdom: Bacteria
• Replicon accession: NC_009455
• Strand: +
• Start bp: 460298
• End bp: 460846
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640529368
• Product: 50S ribosomal protein L6
• Protein accession: YP_001213929
• Protein GI: 147669111
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0000000170165
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTAGAA TAGGTAAAAT GCCGATAAAA GTTCCACTTG GCATAAAGGT GGATATAAAC 
GGGAATGATG TAACTGTTAA AGGCCCCAAG GGGACACTTA GCAGAAGCTT CAGGCCTGAA 
GTAACCATTA ACCGGGAGGG TGATTATTTG GTAGTAGCCC CGGTGGGTAC AGACAAGGCC 
ACCAGGGCTT TCTTTGGCCT TAGCCGGACC CTTTTGGATA ATATGATTGT GGGTGTCAAA 
GACGGTTTTG ACAAGAACCT GGAAATCGTG GGCGTGGGTA TGCGTGCTGA TAAAGACGGC 
GACAAGGTTG TCTTTAAGGT AGGCTTTTCA CACTCTGTTA CAGTAGCTCC TCCGGCGGGC 
ATCACTTTGA GTGTAGACGG TACCACCAAG GTCAAGGTAT CCGGTATAAA TAAAGAAGAT 
GTAGGCCAGA TGGCTGCTGA AATCAGGTCT ATCAGAAAAC CCGATCATTA TATGGGCAAG 
GGTATCAGAT ATGCCGGCGA ATATGTACGC ATCAAACCCG GCAAGGCTAT AGGAAAGGGT 
GCTAAGTAA 

 

Protein sequence

MSRIGKMPIK VPLGIKVDIN GNDVTVKGPK GTLSRSFRPE VTINREGDYL VVAPVGTDKA 
TRAFFGLSRT LLDNMIVGVK DGFDKNLEIV GVGMRADKDG DKVVFKVGFS HSVTVAPPAG 
ITLSVDGTTK VKVSGINKED VGQMAAEIRS IRKPDHYMGK GIRYAGEYVR IKPGKAIGKG 
AK