| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0399 |
|---|
| Symbol | |
|---|
| ID | 5131121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 402553 |
|---|
| End bp | 403392 |
|---|
| Gene Length | 840 bp |
|---|
| Protein Length | 279 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640529300 |
|---|
| Product | degV family protein |
|---|
| Protein accession | YP_001213862 |
|---|
| Protein GI | 147669044 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1307] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR00762] EDD domain protein, DegV family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000011327 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCA AAATTGTTAC GGACAGCACA GCTGATATAC CTCCCCAACT GGCAAAATCT
CTGGGAATAA CCATCGTCCC CCTGTACGTC CGCTTTGGAG AAAAAGCCTT GAAAGACGGG
GTGGAAATAA CCCAGGACCA GTTCTTTGAA AGACTCCAGA CAGAATCGGT TCACCCCAAT
ACCTCACAGC CATCACCTCA GGATTTTATA GATGTATATA GGGAGCTGGC ACCCACTTGC
GACGGAATTG TCTCCATCCA TATTTCTTCC AAGCTTTCCG GCACTTATGA CTCCGCTATT
CAGGCGAAAA AACTGCTTGG CAAGGACGCC CCCCCGATAG AAGTTATAGA TTCACGTTCG
GTTTCCATGG GGCTGGGACT GCTGGGTCTA CTGGGGGCGG AAGTGGCTTC CTCAGGAAAA
AATCTTAAGG AAGTGGCCGA TACGGTACGC AGTTCGGTAG AAAAAATCCA GATGATGGGC
TTCTTTGATA CGCTTAAGTA TCTGGCTCTG GGCGGGCGTA TAGGTAAATC CAAAGCCCTG
CTGGGATCAC TCCTTTCGGT TAAACCGGTT TTGGTTGTAG GAAACGGTGA GCTTTTACCT
GCCGGACAGG TACGAAGCCG CAGCAAGGGT ATGGAAAAGC TTACCGAATT TACGGCCGGG
GTAAAAAATA TTGCCGGTTT ATCAGTTATT TACACCACCA CCCCTGATGA AGCAGTGGCC
TTGGCAGACC GACTGGCAGA GTTTTTCCCG CGTAAACAGA TAGTAATATC CAGACTAGGA
GCTGCTCTGG GCGTACATGC AGGTCCGGGC ACTCTTTTCG TAGCCACCCG CTCAAATTAG
|
|---|
| Protein sequence | MNIKIVTDST ADIPPQLAKS LGITIVPLYV RFGEKALKDG VEITQDQFFE RLQTESVHPN
TSQPSPQDFI DVYRELAPTC DGIVSIHISS KLSGTYDSAI QAKKLLGKDA PPIEVIDSRS
VSMGLGLLGL LGAEVASSGK NLKEVADTVR SSVEKIQMMG FFDTLKYLAL GGRIGKSKAL
LGSLLSVKPV LVVGNGELLP AGQVRSRSKG MEKLTEFTAG VKNIAGLSVI YTTTPDEAVA
LADRLAEFFP RKQIVISRLG AALGVHAGPG TLFVATRSN
|
|---|
| |