| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DehaBAV1_0112 |
|---|
| Symbol | |
|---|
| ID | 5132438 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dehalococcoides sp. BAV1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009455 |
|---|
| Strand | - |
|---|
| Start bp | 111779 |
|---|
| End bp | 113299 |
|---|
| Gene Length | 1521 bp |
|---|
| Protein Length | 506 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640529015 |
|---|
| Product | reductive dehalogenase |
|---|
| Protein accession | YP_001213581 |
|---|
| Protein GI | 147668763 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1600] Uncharacterized Fe-S protein |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02486] reductive dehalogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAGT TCCATTCAAT ATTATCCCGT CGTGATTTTA TGAAGAGTTT AGGCTTAGCT
AGTGCAGGAA TTGGCGCAGC TAGTCTGGGA GGAGTGAATG CCACTGCACC CTTTTTCCAT
GATGTGGATG AAATCACATC GTCTCCAAGC GCCATTACCA AAAAACCATG GTGGGTAAAA
CTCCAGGACA AACCGACCGT TCCAATGGAT TTGAGCCTTT TGGAACCCGG CCGAACCAAA
GTTTGGTGTA TGCCCCCAGA TGATCCCTCT GGGCCAGTTA CTTTGAGGGC ACCAGGTTAT
TCAGAGGAAG AAACCAGACA GAAATTTACG GATTATTTTA AGAAAGAATG GGGGACATGG
GATCCGGGTC CGACTATGGA AGGCTTCGGT GATTTCCCTG AACGGACTAC AGAGCACATT
GGGCCTATCA GGGATAATGC TCTCCTTGCA GGACTTATGC CATTCTTATT TGGGAAATTA
CCAGACGAGA TCATAGCTGC TGAAAAAGGT CAGTACCTAA GTTATTTGCT GGATAAACCC
TGTGGTTGGC GTTATGCCGC TCCTTTAGAA CAGCGTGGCG GTACCAAATG GCAGGGAACC
CCCGAAGAAA ACCTGCGTAC TGTCAGAGCA GCAGCTCGCT TCTACGGAGC AGATGATGTC
GGAGCTATCG AAGTTGACGA GGATTTCTTA AGGGTAATGT GGGGGGTCTC TCGTTTCCCG
TTCATACCTG TCCCAGTACA ATTTGAATGG GGAGATGTAG ATGATTTTGT TCCTACCCCC
AGTGCTACAA GACCAACAAA AATTATTATT CCCCGTAGAT GCAAATATTT TGTTCATTGG
ACTATGCGTC AACCACCTTC ACGGCTTAAG CATGATTCAG GTACTCAACA AGGCCCAAGC
CAAGGTTGGA CTTACTCTCG AAATCCTATG GTTAATGTCA ATATACAGGA ATTTTTATGG
GGACTTGGAT ATATTGCACT GACAAACTGG TCTGGTTATC TCATACCCAC CGGCTATGCC
GGTGTTGCAT CTGGTGCAGG TGAACTTTCA CGGTGGAGTG GAGTATTAAC TCCTAAATTT
GGCAATCAGG TGCGCGGTAT GTATGGATTC CTAACCGATT TGCCTTTAGC TCCCACCAAG
CCAATAAACT TTGGTGGTTA CGAATTCTGC AAAACCTGCG GTATTTGTGC CGATGCTTGT
CCTATGGGGG CTATCCAAAA AGGAGAACCT TCTTGGGACG CATCGGAGAT CTGGCAAAAC
CCGGGGTATT TAGGATGGCG TCTGGACTTA ACAAAATGTT CACATTGCCC AGTTTGTCAA
GGTGTTTGTC CTTTCAATAC GACTGATGAC AGCTTTGTTC ATAACCTGGT TAAGGGTACT
ATCCCTAATG TCAAATTATT TAATGGTTTC TTTGCCAACA TGGAGCGTGA TTTTGGATAT
GGTCGTAAGC CATACGAGGA TTGGTGGGAA AATGCTGCAG ATGGAAAAGA ACCCGTGTTT
GGTATTGATA GTACTCAGTA A
|
|---|
| Protein sequence | MSQFHSILSR RDFMKSLGLA SAGIGAASLG GVNATAPFFH DVDEITSSPS AITKKPWWVK
LQDKPTVPMD LSLLEPGRTK VWCMPPDDPS GPVTLRAPGY SEEETRQKFT DYFKKEWGTW
DPGPTMEGFG DFPERTTEHI GPIRDNALLA GLMPFLFGKL PDEIIAAEKG QYLSYLLDKP
CGWRYAAPLE QRGGTKWQGT PEENLRTVRA AARFYGADDV GAIEVDEDFL RVMWGVSRFP
FIPVPVQFEW GDVDDFVPTP SATRPTKIII PRRCKYFVHW TMRQPPSRLK HDSGTQQGPS
QGWTYSRNPM VNVNIQEFLW GLGYIALTNW SGYLIPTGYA GVASGAGELS RWSGVLTPKF
GNQVRGMYGF LTDLPLAPTK PINFGGYEFC KTCGICADAC PMGAIQKGEP SWDASEIWQN
PGYLGWRLDL TKCSHCPVCQ GVCPFNTTDD SFVHNLVKGT IPNVKLFNGF FANMERDFGY
GRKPYEDWWE NAADGKEPVF GIDSTQ
|
|---|
| |