Gene DehaBAV1_0004 details

Gene Information

• Locus tag: DehaBAV1_0004
• ID: 5131176
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dehalococcoides sp. BAV1
• Kingdom: Bacteria
• Replicon accession: NC_009455
• Strand: -
• Start bp: 3868
• End bp: 5796
• Gene Length: 1929 bp
• Protein Length: 642 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 640528905
• Product: DNA gyrase subunit B
• Protein accession: YP_001213474
• Protein GI: 147668656
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
• TIGRFAM ID: [TIGR01059] DNA gyrase, B subunit

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTAGATG CAAATAAAGC CAAACCGGGT GCCAATTCAG AAACCTATAC AGCCAGTGAT 
ATCCAGGTAC TGGAAGGTCT GGCCGCTGTC CGCAAAAGGC CGGGCATGTA TATCGGCTCT 
ACAGACCAGC GGGGGTTGCA TCACCTGGTT TATGAAATTG TTTATAACAG CGTAGATGAA 
GCCATGGCCG GGGTATGTGA CCGGATTAAG GTCATAATGT TTAAAGACGG CAGTGTCAGC 
GTTGAGGATA ACGGCCGCGG TATCCCGGTA GACATTCACT CTACTACCAA GATTTCCGCC 
CTTGAAACGG TTATGACCGT CCTGCATGCC GGTGCCAAAT TCGGCGGCAA GACCTATCAG 
GTATCCGGCG GTCTGCATGG TGTGGGTGCT TCAGTGGTAA ACGCTCTGTC CGAATGGACT 
ACAGTCAAGG TCAGGCGCAA CGGCAAAATT TACCAGCAAA GCTACCTGCG CGGCAAGCCC 
AGCACCCCGC TGGAAGAAGT GGGAGTATCA GAAGGTTCCG GTACCACCAC TATATTCATG 
GCTGATTCAC AAATATTTTC CACCACGGAA TATGACTTTG AAACCCTGAC TGACCGCCTG 
CGGGAGATAG CCTATCTCAA CAAGGGGCTT GAGGTATATA TTTACGACGA AAAATCTGAT 
CAGGAACGTA CTTATTACTT TGAGGGTGGT ATTACCGGCT TTGTACGCCA TCTAAACCGC 
AACCGCGAAG TACGCCACCG CCAGCCTATT TATATAACCA AAAAATCCGA CAGCACTATT 
CTGGAAGTAG CTATCCAGTA CAATGACGGC TACTCGGATT CCACCCTTAC CTTTGCCAAC 
TGTGTAAATA CCGTAGACGG CGGTACCCAC CTGACCGGTT TTCGTTCCGC CCTGACCCGG 
GCTTTTAATG ACTACGCCCA CAAGTCCAAA TTTCTTAAAG ACACCGACCC GAACCTGATG 
GGTGATGACG TACGTGAAGG CATCGTAGCC ATCGTCAGCG TCAAACTGCC CGAACCCCAG 
TTTGAGGGAC AGACCAAGGG CAAGCTGGGC AATATTGAAA TAAAGAGTTT TGTGGAAAGT 
GCCGTTGCCG AACAGCTTTC CCTTTATCTG GAAGAACATC CGGATGATAC CAAACGCATA 
TTAGAAAAAT GTATAACCGC CGCCAAGGCC CGTGAAGCCG CCCGCAAGGC CCGTGACCTG 
ATTATCCGCA AGAGTGCTCT GGATACAGGC ACCCTGCCTG GCAAGCTGGC AGACTGCTCA 
GAGAGAGATG CTTCGCTGTG CGAACTGTTT CTGGTAGAGG GGGATTCAGC CGGTGGTTCA 
GCCAAACAGG GCCGAAACCG CCGCTTTCAG GCCATACTCC CGTTACGGGG TAAAATTTTG 
AACGTAGAAA AGGCTTCACC TGACAAGATG CTGGCTCACG AAGAAATCAG GGCCATCATC 
ACCGCTCTGG CAGCCGGTAT AGATAATGAT TTTGACCCCT CTAAACTGCG CTACAACCGT 
CTGGTACTCA TGACAGATGC TGATGTGGAC GGCTCTCATA TACGAACACT CCTTTTAACC 
TTTTTCTTCC GCCATATGCC CCGCCTTATT ACCGAAAGCC ATTTATTCAT TGCCCAGCCG 
CCTCTCTACA AGATAAAAAT AGGCAGTACC GAGCACTGGG TATACAATGA TGCTGAAAAA 
GAGGCTATCC TTGCCCAGAC CAAGAGCACC AAGGTAGATA TCCAGCGGTA TAAAGGTCTG 
GGTGAAATGA GTGCCGAGCA ACTCTGGAGG ACTACCATGG ACCCGGCCAG CCGCACCCTG 
CTTGAAGTAA AAGTGGAAGA TGCCGCCAAG GCTGACCAGA TTTTTAACCT GCTGATGGGC 
GGTGAAGTAG CTCCCCGCAA GGCCTTTATC CAGTCTCACT CCCGCACCGT CAAGAACCTG 
GATATCTAA 

 

Protein sequence

MLDANKAKPG ANSETYTASD IQVLEGLAAV RKRPGMYIGS TDQRGLHHLV YEIVYNSVDE 
AMAGVCDRIK VIMFKDGSVS VEDNGRGIPV DIHSTTKISA LETVMTVLHA GAKFGGKTYQ 
VSGGLHGVGA SVVNALSEWT TVKVRRNGKI YQQSYLRGKP STPLEEVGVS EGSGTTTIFM 
ADSQIFSTTE YDFETLTDRL REIAYLNKGL EVYIYDEKSD QERTYYFEGG ITGFVRHLNR 
NREVRHRQPI YITKKSDSTI LEVAIQYNDG YSDSTLTFAN CVNTVDGGTH LTGFRSALTR 
AFNDYAHKSK FLKDTDPNLM GDDVREGIVA IVSVKLPEPQ FEGQTKGKLG NIEIKSFVES 
AVAEQLSLYL EEHPDDTKRI LEKCITAAKA REAARKARDL IIRKSALDTG TLPGKLADCS 
ERDASLCELF LVEGDSAGGS AKQGRNRRFQ AILPLRGKIL NVEKASPDKM LAHEEIRAII 
TALAAGIDND FDPSKLRYNR LVLMTDADVD GSHIRTLLLT FFFRHMPRLI TESHLFIAQP 
PLYKIKIGST EHWVYNDAEK EAILAQTKST KVDIQRYKGL GEMSAEQLWR TTMDPASRTL 
LEVKVEDAAK ADQIFNLLMG GEVAPRKAFI QSHSRTVKNL DI