Gene Fjoh_5001 details

Gene Information

• Locus tag: Fjoh_5001
• ID: 5094271
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Flavobacterium johnsoniae UW101
• Kingdom: Bacteria
• Replicon accession: NC_009441
• Strand: +
• Start bp: 6038363
• End bp: 6039055
• Gene Length: 693 bp
• Protein Length: 230 aa
• Translation table: 11
• GC content: 39%
• IMG OID: 644744426
• Product: ABC transporter related
• Protein accession: YP_001197319
• Protein GI: 146302728
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAGATC CATTAATTAA AATAACCGAC ATACGACGAA ATTTCATATT GGGCAATGAA 
ACTGTATATG TTTTAAAAGG AATTAATTTA GAAATCAACA AAGGCGAATA TGTCGCTTTA 
ATGGGGCCTT CGGGATCCGG AAAATCAACT TTAATGAATT TATTGGGTTG TTTGGATACG 
CCTACTTCCG GAAGATATGT TTTGAACGGA AAAGATGTCA GCCAAATGCG CGATGATGAA 
CTCGCCGGAA TACGTAATAC AGAAATAGGT TTTGTTTTTC AAACCTTCAA TCTTTTACCC 
AGAACAACAG CTCTGGACAA TGTTGCACTG CCAATGATTT ATGCCGGATA TTCAAAATCA 
GATAGAAATG TAAGAGCCAC CGAGGTTTTA AAACAAGTAA ATCTTGCTGA TAGAATGGAC 
CACCAGCCCA ATCAGTTATC AGGAGGTCAG CGCCAGCGTG TTGCCATTGC CCGTGCCCTG 
GTAAACAAAC CTTCGATTAT TTTAGCCGAT GAACCTACAG GAAACCTGGA CAGTAAAACC 
TCTGTAGAAA TCATGAAACT TTTTGGAGAT ATTCATGCAC AAGGAAATAC TGTTATTCTG 
GTAACCCACG AAGAAGATAT TGCTGCGTAT GCGCACAGAG TTATTCGTTT ACGAGACGGT 
TTAATTGAAA GTGACACGAG TAGATCTGTT TAA 

 

Protein sequence

MADPLIKITD IRRNFILGNE TVYVLKGINL EINKGEYVAL MGPSGSGKST LMNLLGCLDT 
PTSGRYVLNG KDVSQMRDDE LAGIRNTEIG FVFQTFNLLP RTTALDNVAL PMIYAGYSKS 
DRNVRATEVL KQVNLADRMD HQPNQLSGGQ RQRVAIARAL VNKPSIILAD EPTGNLDSKT 
SVEIMKLFGD IHAQGNTVIL VTHEEDIAAY AHRVIRLRDG LIESDTSRSV